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DS-2175 Citation PDF initial implementation
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232
dspace-api/src/main/java/org/dspace/curate/CitationPage.java
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232
dspace-api/src/main/java/org/dspace/curate/CitationPage.java
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/**
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* The contents of this file are subject to the license and copyright
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* detailed in the LICENSE and NOTICE files at the root of the source
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* tree and available online at
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*
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* http://www.dspace.org/license/
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*/
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package org.dspace.curate;
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import org.apache.commons.lang.ArrayUtils;
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import org.apache.log4j.Logger;
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import org.dspace.authorize.AuthorizeException;
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import org.dspace.content.*;
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import org.dspace.disseminate.CitationDocument;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.IOException;
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import java.io.InputStream;
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import java.sql.SQLException;
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import java.util.HashMap;
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import java.util.Map;
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/**
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* CitationPage
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*
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* This task is used to generate a cover page with citation information for text
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* documents and then to add that cover page to a PDF version of the document
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* replacing the originally uploaded document form the user's perspective.
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*
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* @author Ryan McGowan
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*/
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@Distributive
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@Mutative
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public class CitationPage extends AbstractCurationTask {
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/**
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* Class Logger
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*/
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private static Logger log = Logger.getLogger(CitationPage.class);
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private int status = Curator.CURATE_UNSET;
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private String result = null;
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/**
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* A StringBuilder to handle result string building process.
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*/
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private StringBuilder resBuilder;
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/**
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* The name to give the bundle we add the cited pages to.
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*/
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private static final String DISPLAY_BUNDLE_NAME = "DISPLAY";
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/**
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* The name of the bundle to move source documents into after they have been
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* cited.
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*/
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private static final String PRESERVATION_BUNDLE_NAME = "PRESERVATION";
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/**
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* {@inheritDoc}
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* @see CurationTask#perform(DSpaceObject)
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*/
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@Override
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public int perform(DSpaceObject dso) throws IOException {
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// Deal with status and result as well as call distribute.
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this.resBuilder = new StringBuilder();
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this.distribute(dso);
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this.result = this.resBuilder.toString();
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this.setResult(this.result);
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this.report(this.result);
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return this.status;
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}
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/**
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* {@inheritDoc}
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* @see AbstractCurationTask#performItem(Item)
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*/
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@Override
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protected void performItem(Item item) throws SQLException {
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//Determine if the DISPLAY bundle exits. If not, create it.
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Bundle[] dBundles = item.getBundles(CitationPage.DISPLAY_BUNDLE_NAME);
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Bundle dBundle = null;
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if (dBundles == null || dBundles.length == 0) {
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try {
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dBundle = item.createBundle(CitationPage.DISPLAY_BUNDLE_NAME);
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} catch (AuthorizeException e) {
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log.error("User not authroized to create bundle on item \""
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+ item.getName() + "\": " + e.getMessage());
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}
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} else {
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dBundle = dBundles[0];
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}
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//Create a map of the bitstreams in the displayBundle. This is used to
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//check if the bundle being cited is already in the display bundle.
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Map<String,Bitstream> displayMap = new HashMap<String,Bitstream>();
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for (Bitstream bs : dBundle.getBitstreams()) {
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displayMap.put(bs.getName(), bs);
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}
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//Determine if the preservation bundle exists and add it if we need to.
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//Also, set up bundles so it contains all ORIGINAL and PRESERVATION
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//bitstreams.
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Bundle[] pBundles = item.getBundles(CitationPage.PRESERVATION_BUNDLE_NAME);
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Bundle pBundle = null;
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Bundle[] bundles = null;
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if (pBundles != null && pBundles.length > 0) {
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pBundle = pBundles[0];
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bundles = (Bundle[]) ArrayUtils.addAll(item.getBundles("ORIGINAL"), pBundles);
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} else {
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try {
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pBundle = item.createBundle(CitationPage.PRESERVATION_BUNDLE_NAME);
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} catch (AuthorizeException e) {
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log.error("User not authroized to create bundle on item \""
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+ item.getName() + "\": " + e.getMessage());
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}
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bundles = item.getBundles("ORIGINAL");
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}
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//Start looping through our bundles. Anything that is citable in these
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//bundles will be cited.
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for (Bundle bundle : bundles) {
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Bitstream[] bitstreams = bundle.getBitstreams();
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// Loop through each file and generate a cover page for documents
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// that are PDFs.
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for (Bitstream bitstream : bitstreams) {
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BitstreamFormat format = bitstream.getFormat();
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//If bitstream is a PDF document then it is citable.
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CitationDocument citationDocument = new CitationDocument();
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if(citationDocument.canGenerateCitationVersion(bitstream)) {
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this.resBuilder.append(item.getHandle() + " - "
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+ bitstream.getName() + " is citable.");
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try {
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//Create the cited document
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File citedDocument = citationDocument.makeCitedDocument(bitstream);
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//Add the cited document to the approiate bundle
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this.addCitedPageToItem(citedDocument, bundle, pBundle,
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dBundle, displayMap, item, bitstream);
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} catch (Exception e) {
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//Could be many things, but nothing that should be
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//expected.
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//Print out some detailed information for debugging.
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e.printStackTrace();
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StackTraceElement[] stackTrace = e.getStackTrace();
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StringBuilder stack = new StringBuilder();
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int numLines = Math.min(stackTrace.length, 12);
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for (int j = 0; j < numLines; j++) {
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stack.append("\t" + stackTrace[j].toString() + "\n");
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}
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if (stackTrace.length > numLines) {
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stack.append("\t. . .\n");
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}
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log.error(e.toString() + " -> \n" + stack.toString());
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this.resBuilder.append(", but there was an error generating the PDF.\n");
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this.status = Curator.CURATE_ERROR;
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}
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} else {
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//bitstream is not a document
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this.resBuilder.append(item.getHandle() + " - "
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+ bitstream.getName() + " is not citable.\n");
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this.status = Curator.CURATE_SUCCESS;
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}
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}
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}
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}
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/**
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* A helper function for {@link CitationPage#performItem(Item)}. This function takes in the
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* cited document as a File and adds it to DSpace properly.
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*
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* @param citedTemp The temporary File that is the cited document.
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* @param bundle The bundle the cited file is from.
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* @param pBundle The preservation bundle. The original document should be
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* put in here if it is not already.
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* @param dBundle The display bundle. The cited document gets put in here.
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* @param displayMap The map of bitstream names to bitstreams in the display
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* bundle.
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* @param item The item containing the bundles being used.
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* @param bitstream The original source bitstream.
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* @throws SQLException
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* @throws AuthorizeException
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* @throws IOException
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*/
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private void addCitedPageToItem(File citedTemp, Bundle bundle, Bundle pBundle,
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Bundle dBundle, Map<String,Bitstream> displayMap, Item item,
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Bitstream bitstream) throws SQLException, AuthorizeException, IOException {
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//If we are modifying a file that is not in the
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//preservation bundle then we have to move it there.
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if (bundle.getID() != pBundle.getID()) {
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pBundle.addBitstream(bitstream);
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bundle.removeBitstream(bitstream);
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Bitstream[] originalBits = bundle.getBitstreams();
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if (originalBits == null || originalBits.length == 0) {
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item.removeBundle(bundle);
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}
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}
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//Create an input stream form the temporary file
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//that is the cited document and create a
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//bitstream from it.
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InputStream inp = new FileInputStream(citedTemp);
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if (displayMap.containsKey(bitstream.getName())) {
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dBundle.removeBitstream(displayMap.get(bitstream.getName()));
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}
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Bitstream citedBitstream = dBundle.createBitstream(inp);
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inp.close(); //Close up the temporary InputStream
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//Setup a good name for our bitstream and make
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//it the same format as the source document.
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citedBitstream.setName(bitstream.getName());
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citedBitstream.setFormat(bitstream.getFormat());
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citedBitstream.setDescription(bitstream.getDescription());
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this.resBuilder.append(" Added "
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+ citedBitstream.getName()
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+ " to the " + CitationPage.DISPLAY_BUNDLE_NAME + " bundle.\n");
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//Run update to propagate changes to the
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//database.
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item.update();
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this.status = Curator.CURATE_SUCCESS;
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}
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}
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