mirror of
https://github.com/DSpace/DSpace.git
synced 2025-10-18 15:33:09 +00:00
[CST-18016] Added tests for OpenAlexPublicationByDOIExternalSourcesIT
This commit is contained in:
Adamo
@@ -57,6 +57,8 @@ public class ExternalSourcesRestControllerIT extends AbstractControllerIntegrati
|
|||||||
"openalexPublication", "openalexPublication", false),
|
"openalexPublication", "openalexPublication", false),
|
||||||
ExternalSourceMatcher.matchExternalSource(
|
ExternalSourceMatcher.matchExternalSource(
|
||||||
"openalexPublicationByAuthorId", "openalexPublicationByAuthorId", false),
|
"openalexPublicationByAuthorId", "openalexPublicationByAuthorId", false),
|
||||||
|
ExternalSourceMatcher.matchExternalSource(
|
||||||
|
"openalexPublicationByDOI", "openalexPublicationByDOI", false),
|
||||||
ExternalSourceMatcher.matchExternalSource(
|
ExternalSourceMatcher.matchExternalSource(
|
||||||
"openalexPerson", "openalexPerson", false),
|
"openalexPerson", "openalexPerson", false),
|
||||||
ExternalSourceMatcher.matchExternalSource(
|
ExternalSourceMatcher.matchExternalSource(
|
||||||
@@ -68,7 +70,7 @@ public class ExternalSourcesRestControllerIT extends AbstractControllerIntegrati
|
|||||||
ExternalSourceMatcher.matchExternalSource(
|
ExternalSourceMatcher.matchExternalSource(
|
||||||
"openalexJournal", "openalexJournal", false)
|
"openalexJournal", "openalexJournal", false)
|
||||||
)))
|
)))
|
||||||
.andExpect(jsonPath("$.page.totalElements", Matchers.is(19)));
|
.andExpect(jsonPath("$.page.totalElements", Matchers.is(20)));
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
|||||||
@@ -0,0 +1,473 @@
|
|||||||
|
/**
|
||||||
|
* The contents of this file are subject to the license and copyright
|
||||||
|
* detailed in the LICENSE and NOTICE files at the root of the source
|
||||||
|
* tree and available online at
|
||||||
|
*
|
||||||
|
* http://www.dspace.org/license/
|
||||||
|
*/
|
||||||
|
package org.dspace.app.rest;
|
||||||
|
|
||||||
|
import static com.jayway.jsonpath.JsonPath.read;
|
||||||
|
import static org.hamcrest.Matchers.is;
|
||||||
|
import static org.junit.Assert.assertEquals;
|
||||||
|
import static org.junit.Assert.assertTrue;
|
||||||
|
import static org.mockito.ArgumentMatchers.anyInt;
|
||||||
|
import static org.mockito.ArgumentMatchers.anyMap;
|
||||||
|
import static org.mockito.ArgumentMatchers.anyString;
|
||||||
|
import static org.mockito.Mockito.times;
|
||||||
|
import static org.mockito.Mockito.verify;
|
||||||
|
import static org.mockito.Mockito.when;
|
||||||
|
import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get;
|
||||||
|
import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post;
|
||||||
|
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath;
|
||||||
|
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status;
|
||||||
|
|
||||||
|
import java.io.InputStream;
|
||||||
|
import java.nio.charset.Charset;
|
||||||
|
import java.util.Map;
|
||||||
|
import java.util.concurrent.atomic.AtomicReference;
|
||||||
|
|
||||||
|
import org.apache.commons.io.IOUtils;
|
||||||
|
import org.dspace.app.rest.matcher.ExternalSourceEntryMatcher;
|
||||||
|
import org.dspace.app.rest.matcher.ExternalSourceMatcher;
|
||||||
|
import org.dspace.app.rest.test.AbstractControllerIntegrationTest;
|
||||||
|
import org.dspace.builder.CollectionBuilder;
|
||||||
|
import org.dspace.builder.CommunityBuilder;
|
||||||
|
import org.dspace.builder.WorkspaceItemBuilder;
|
||||||
|
import org.dspace.content.Collection;
|
||||||
|
import org.dspace.content.Community;
|
||||||
|
import org.dspace.importer.external.liveimportclient.service.LiveImportClient;
|
||||||
|
import org.dspace.importer.external.openalex.service.OpenAlexImportMetadataSourceServiceImpl;
|
||||||
|
import org.hamcrest.Matchers;
|
||||||
|
import org.junit.Before;
|
||||||
|
import org.junit.Test;
|
||||||
|
import org.mockito.ArgumentCaptor;
|
||||||
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
import org.springframework.beans.factory.annotation.Qualifier;
|
||||||
|
import org.springframework.http.MediaType;
|
||||||
|
import org.springframework.test.context.bean.override.mockito.MockitoBean;
|
||||||
|
import org.springframework.test.util.ReflectionTestUtils;
|
||||||
|
|
||||||
|
/**
|
||||||
|
* @author Adamo Fapohunda (adamo.fapohunda at 4science.com)
|
||||||
|
**/
|
||||||
|
public class OpenAlexPublicationByDOIExternalSourcesIT extends AbstractControllerIntegrationTest {
|
||||||
|
|
||||||
|
|
||||||
|
@MockitoBean
|
||||||
|
private LiveImportClient liveImportClient;
|
||||||
|
|
||||||
|
@Autowired
|
||||||
|
@Qualifier("openalexImportPublicationByDOIService")
|
||||||
|
private OpenAlexImportMetadataSourceServiceImpl openAlexImportMetadataSourceService;
|
||||||
|
|
||||||
|
|
||||||
|
@Before
|
||||||
|
public void setUp() throws Exception {
|
||||||
|
super.setUp();
|
||||||
|
ReflectionTestUtils.setField(openAlexImportMetadataSourceService, "liveImportClient", liveImportClient);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void findOneOpenalexImportPublicationByDOIExternalSourceTest() throws Exception {
|
||||||
|
getClient().perform(get("/api/integration/externalsources?size=25")).andExpect(status().isOk())
|
||||||
|
.andExpect(jsonPath("$._embedded.externalsources", Matchers.hasItem(
|
||||||
|
ExternalSourceMatcher.matchExternalSource("openalexPublicationByDOI",
|
||||||
|
"openalexPublicationByDOI", false))));
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void findOpenalexPublicationByDOIExternalSourceEntriesEmptyWithQueryTest() throws Exception {
|
||||||
|
|
||||||
|
try (InputStream file = getClass().getResourceAsStream("openalex-empty.json")) {
|
||||||
|
String jsonResponse = IOUtils.toString(file, Charset.defaultCharset());
|
||||||
|
when(liveImportClient.executeHttpGetRequest(anyInt(), anyString(), anyMap()))
|
||||||
|
.thenReturn(jsonResponse);
|
||||||
|
|
||||||
|
|
||||||
|
getClient().perform(get("/api/integration/externalsources/openalexPublicationByDOI/entries")
|
||||||
|
.param("query", "W1775749144"))
|
||||||
|
.andExpect(status().isOk()).andExpect(jsonPath("$.page.number", is(0)));
|
||||||
|
verify(liveImportClient, times(2)).executeHttpGetRequest(anyInt(), anyString(), anyMap());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void findOneOpenalexPublicationByDOIExternalSourceEntriesWithQueryTest() throws Exception {
|
||||||
|
|
||||||
|
try (InputStream file = getClass().getResourceAsStream("openalex-publication-single.json")) {
|
||||||
|
String jsonResponse = IOUtils.toString(file, Charset.defaultCharset());
|
||||||
|
|
||||||
|
when(liveImportClient.executeHttpGetRequest(anyInt(), anyString(), anyMap()))
|
||||||
|
.thenReturn(jsonResponse);
|
||||||
|
|
||||||
|
getClient().perform(get("/api/integration/externalsources/openalexPublicationByDOI/entries")
|
||||||
|
.param("query", "10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(status().isOk())
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries", Matchers.hasSize(1)))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].id").value("W1775749144"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].display")
|
||||||
|
.value("PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].value")
|
||||||
|
.value("PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].externalSource")
|
||||||
|
.value("openalexPublicationByDOI"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.contributor.author']",
|
||||||
|
Matchers.hasSize(4)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.contributor.author'][0].value")
|
||||||
|
.value("OliverH. Lowry"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.contributor.author'][1].value")
|
||||||
|
.value("NiraJ. Rosebrough"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.contributor.author'][2].value")
|
||||||
|
.value("A. Farr"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.contributor.author'][3].value")
|
||||||
|
.value("RoseJ. Randall"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.other']",
|
||||||
|
Matchers.hasSize(1)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.other'][0].value")
|
||||||
|
.value("https://pubmed.ncbi.nlm.nih.gov/14907713"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri']",
|
||||||
|
Matchers.hasSize(7)))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][0]" +
|
||||||
|
".value")
|
||||||
|
.value("https://doi.org/10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][1]" +
|
||||||
|
".value")
|
||||||
|
.value("https://doi.org/10.1016/s0021-9258(19)52451-6/pdf"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][2]" +
|
||||||
|
".value")
|
||||||
|
.value("https://doi.org/10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][3]" +
|
||||||
|
".value")
|
||||||
|
.value("https://www.jbc.org/article/S0021-9258(19)52451-6/pdf"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][4]" +
|
||||||
|
".value")
|
||||||
|
.value("https://www.jbc.org/article/S0021-9258(19)52451-6/pdf"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][5]" +
|
||||||
|
".value")
|
||||||
|
.value("https://doi.org/10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.uri'][6]" +
|
||||||
|
".value")
|
||||||
|
.value("https://doi.org/10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.date.issued'][0].value")
|
||||||
|
.value("1951-11-01"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier" +
|
||||||
|
".openalex'][0].value").value("W1775749144"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.citation.volume'][0]" +
|
||||||
|
".value")
|
||||||
|
.value("193"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.citation.issue'][0].value")
|
||||||
|
.value("1"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.citation" +
|
||||||
|
".startPage'][0].value")
|
||||||
|
.value("265"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.citation" +
|
||||||
|
".endPage'][0].value")
|
||||||
|
.value("275"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.version'][0].value")
|
||||||
|
.value("http://purl.org/coar/version/c_970fb48d4fbd8a85"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['oaire.citation.title'][0].value")
|
||||||
|
.value("Journal of Biological Chemistry"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.issn']",
|
||||||
|
Matchers.hasSize(3)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.identifier.doi'][0].value")
|
||||||
|
.value("10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.language.iso'][0].value")
|
||||||
|
.value("en"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.title'][0].value")
|
||||||
|
.value("PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.subject']",
|
||||||
|
Matchers.hasSize(13)))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.subject'][9].value")
|
||||||
|
.value("Peer Review, Research standards"))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.subject'][12].value")
|
||||||
|
.value(
|
||||||
|
"Life Sciences Biochemistry, Genetics and Molecular Biology Molecular " +
|
||||||
|
"Biology Cancer and biochemical research"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.rights.license'][0].value")
|
||||||
|
.value("cc-by"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.externalSourceEntries[0].metadata['dc.type'][0].value")
|
||||||
|
.value("Article"))
|
||||||
|
.andExpect(jsonPath("$.page.totalElements").value(1))
|
||||||
|
.andExpect(jsonPath("$.page.totalPages").value(1))
|
||||||
|
.andExpect(jsonPath("$.page.size").value(20))
|
||||||
|
.andExpect(jsonPath("$.page.number").value(0));
|
||||||
|
|
||||||
|
// Capture arguments
|
||||||
|
ArgumentCaptor<String> urlCaptor = ArgumentCaptor.forClass(String.class);
|
||||||
|
ArgumentCaptor<Map<String, Map<String, String>>> paramsCaptor = ArgumentCaptor.forClass(Map.class);
|
||||||
|
|
||||||
|
verify(liveImportClient, times(2)).executeHttpGetRequest(anyInt(), urlCaptor.capture(),
|
||||||
|
paramsCaptor.capture());
|
||||||
|
|
||||||
|
// Assert the URL is correct
|
||||||
|
assertEquals(2, urlCaptor.getAllValues().size());
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(0));
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(1));
|
||||||
|
|
||||||
|
// Assert the parameters contain "filter" => "authorships.author.id:"
|
||||||
|
assertEquals(2, paramsCaptor.getAllValues().size());
|
||||||
|
Map<String, Map<String, String>> capturedParams = paramsCaptor.getAllValues().get(0);
|
||||||
|
assertTrue(capturedParams.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams.get("uriParameters").get("filter"));
|
||||||
|
assertEquals("20", capturedParams.get("uriParameters").get("per_page"));
|
||||||
|
assertEquals("1", capturedParams.get("uriParameters").get("page"));
|
||||||
|
Map<String, Map<String, String>> capturedParams1 = paramsCaptor.getAllValues().get(1);
|
||||||
|
assertTrue(capturedParams1.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams1.get("uriParameters").get("filter"));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void findOneOpenalexPublicationByDOIExternalSourceEntriesWithUtlDOIQueryTest() throws Exception {
|
||||||
|
|
||||||
|
try (InputStream file = getClass().getResourceAsStream("openalex-publication-single.json")) {
|
||||||
|
String jsonResponse = IOUtils.toString(file, Charset.defaultCharset());
|
||||||
|
|
||||||
|
when(liveImportClient.executeHttpGetRequest(anyInt(), anyString(), anyMap()))
|
||||||
|
.thenReturn(jsonResponse);
|
||||||
|
|
||||||
|
getClient().perform(get("/api/integration/externalsources/openalexPublicationByDOI/entries")
|
||||||
|
.param("query", "https://doi.org/10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(status().isOk())
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries", Matchers.hasSize(1)))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries[0].id").value("W1775749144"));
|
||||||
|
|
||||||
|
// Capture arguments
|
||||||
|
ArgumentCaptor<String> urlCaptor = ArgumentCaptor.forClass(String.class);
|
||||||
|
ArgumentCaptor<Map<String, Map<String, String>>> paramsCaptor = ArgumentCaptor.forClass(Map.class);
|
||||||
|
|
||||||
|
verify(liveImportClient, times(2)).executeHttpGetRequest(anyInt(), urlCaptor.capture(),
|
||||||
|
paramsCaptor.capture());
|
||||||
|
|
||||||
|
// Assert the URL is correct
|
||||||
|
assertEquals(2, urlCaptor.getAllValues().size());
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(0));
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(1));
|
||||||
|
|
||||||
|
// Assert the parameters contain "filter" => "authorships.author.id:"
|
||||||
|
assertEquals(2, paramsCaptor.getAllValues().size());
|
||||||
|
Map<String, Map<String, String>> capturedParams = paramsCaptor.getAllValues().get(0);
|
||||||
|
assertTrue(capturedParams.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams.get("uriParameters").get("filter"));
|
||||||
|
assertEquals("20", capturedParams.get("uriParameters").get("per_page"));
|
||||||
|
assertEquals("1", capturedParams.get("uriParameters").get("page"));
|
||||||
|
Map<String, Map<String, String>> capturedParams1 = paramsCaptor.getAllValues().get(1);
|
||||||
|
assertTrue(capturedParams1.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams1.get("uriParameters").get("filter"));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void findAllOpenalexPublicationByDOIExternalSourceEntriesWithQueryTest() throws Exception {
|
||||||
|
|
||||||
|
try (InputStream file = getClass().getResourceAsStream("openalex-publication-multiple.json")) {
|
||||||
|
String jsonResponse = IOUtils.toString(file, Charset.defaultCharset());
|
||||||
|
|
||||||
|
when(liveImportClient.executeHttpGetRequest(anyInt(), anyString(), anyMap()))
|
||||||
|
.thenReturn(jsonResponse);
|
||||||
|
|
||||||
|
getClient().perform(get("/api/integration/externalsources/openalexPublicationByDOI/entries")
|
||||||
|
.param("query", "10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(status().isOk())
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries", Matchers.hasSize(2)))
|
||||||
|
.andExpect(jsonPath("$._embedded.externalSourceEntries",
|
||||||
|
Matchers.containsInAnyOrder(
|
||||||
|
ExternalSourceEntryMatcher.matchExternalSourceEntry(
|
||||||
|
"W3111255098",
|
||||||
|
"Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine",
|
||||||
|
"Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine",
|
||||||
|
"openalexPublicationByDOI"
|
||||||
|
),
|
||||||
|
ExternalSourceEntryMatcher.matchExternalSourceEntry(
|
||||||
|
"W3008028633",
|
||||||
|
"Characteristics of and Important Lessons From the Coronavirus " +
|
||||||
|
"Disease 2019 (COVID-19) Outbreak in China",
|
||||||
|
"Characteristics of and Important Lessons From the Coronavirus " +
|
||||||
|
"Disease 2019 (COVID-19) Outbreak in China",
|
||||||
|
"openalexPublicationByDOI"
|
||||||
|
)
|
||||||
|
)
|
||||||
|
));
|
||||||
|
|
||||||
|
// Capture arguments
|
||||||
|
ArgumentCaptor<String> urlCaptor = ArgumentCaptor.forClass(String.class);
|
||||||
|
ArgumentCaptor<Map<String, Map<String, String>>> paramsCaptor = ArgumentCaptor.forClass(Map.class);
|
||||||
|
|
||||||
|
verify(liveImportClient, times(2)).executeHttpGetRequest(anyInt(), urlCaptor.capture(),
|
||||||
|
paramsCaptor.capture());
|
||||||
|
|
||||||
|
// Assert the URL is correct
|
||||||
|
assertEquals(2, urlCaptor.getAllValues().size());
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(0));
|
||||||
|
assertEquals("https://api.openalex.org/works", urlCaptor.getAllValues().get(1));
|
||||||
|
|
||||||
|
// Assert the parameters contain "filter" => "authorships.author.id:"
|
||||||
|
assertEquals(2, paramsCaptor.getAllValues().size());
|
||||||
|
Map<String, Map<String, String>> capturedParams = paramsCaptor.getAllValues().get(0);
|
||||||
|
assertTrue(capturedParams.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams.get("uriParameters").get("filter"));
|
||||||
|
assertEquals("20", capturedParams.get("uriParameters").get("per_page"));
|
||||||
|
assertEquals("1", capturedParams.get("uriParameters").get("page"));
|
||||||
|
Map<String, Map<String, String>> capturedParams1 = paramsCaptor.getAllValues().get(1);
|
||||||
|
assertTrue(capturedParams1.containsKey("uriParameters"));
|
||||||
|
assertEquals("doi:10.1016/s0021-9258(19)52451-6", capturedParams1.get("uriParameters").get("filter"));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void createWorkspaceItemFromOpenAlexPubIdTest() throws Exception {
|
||||||
|
context.turnOffAuthorisationSystem();
|
||||||
|
|
||||||
|
//** GIVEN **
|
||||||
|
//1. A community-collection structure with one parent community with sub-community and two collections.
|
||||||
|
parentCommunity = CommunityBuilder.createCommunity(context)
|
||||||
|
.withName("Parent Community")
|
||||||
|
.build();
|
||||||
|
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
|
||||||
|
.withName("Sub Community")
|
||||||
|
.build();
|
||||||
|
Collection col1 = CollectionBuilder.createCollection(context, child1)
|
||||||
|
.withName("Collection 1")
|
||||||
|
.withSubmitterGroup(eperson)
|
||||||
|
.build();
|
||||||
|
context.restoreAuthSystemState();
|
||||||
|
|
||||||
|
AtomicReference<Integer> idRef1 = new AtomicReference<>();
|
||||||
|
try (InputStream file = getClass().getResourceAsStream("openalex-publication-by-author-id.json")) {
|
||||||
|
String jsonResponse = IOUtils.toString(file, Charset.defaultCharset());
|
||||||
|
|
||||||
|
when(liveImportClient.executeHttpGetRequest(anyInt(), anyString(), anyMap()))
|
||||||
|
.thenReturn(jsonResponse);
|
||||||
|
|
||||||
|
String authToken = getAuthToken(eperson.getEmail(), password);
|
||||||
|
|
||||||
|
// create a workspaceitem explicitly in the col1
|
||||||
|
getClient(authToken).perform(post("/api/submission/workspaceitems")
|
||||||
|
.param("owningCollection", col1.getID().toString())
|
||||||
|
.param("embed", "item,sections,collection")
|
||||||
|
.contentType(MediaType.parseMediaType("text/uri-list"))
|
||||||
|
.content(
|
||||||
|
"http://localhost:8080/server/api/integration/externalsources" +
|
||||||
|
"/openalexPublicationByDOI/entryValues/W1775749144"))
|
||||||
|
.andExpect(status().isCreated())
|
||||||
|
.andDo(result -> idRef1.set(read(result.getResponse().getContentAsString(), "$.id")))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.name")
|
||||||
|
.value("PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.contributor.author']",
|
||||||
|
Matchers.hasSize(4)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.contributor.author'][0].value")
|
||||||
|
.value("OliverH. Lowry"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.contributor.author'][1].value")
|
||||||
|
.value("NiraJ. Rosebrough"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.contributor.author'][2].value")
|
||||||
|
.value("A. Farr"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.contributor.author'][3].value")
|
||||||
|
.value("RoseJ. Randall"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.other']",
|
||||||
|
Matchers.hasSize(1)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.identifier.other'][0].value")
|
||||||
|
.value("https://pubmed.ncbi.nlm.nih.gov/14907713"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri']",
|
||||||
|
Matchers.hasSize(7)))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][0]" +
|
||||||
|
".value")
|
||||||
|
.value("/best_oa_location/landing_page_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][1]" +
|
||||||
|
".value")
|
||||||
|
.value("/best_oa_location/pdf_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][2]" +
|
||||||
|
".value")
|
||||||
|
.value("/locations/landing_page_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][3]" +
|
||||||
|
".value")
|
||||||
|
.value("/locations/pdf_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][4]" +
|
||||||
|
".value")
|
||||||
|
.value("/primary_location/landing_page_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][5]" +
|
||||||
|
".value")
|
||||||
|
.value("/primary_location/pdf_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.uri'][6]" +
|
||||||
|
".value")
|
||||||
|
.value("/open_access/oa_url"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.date.issued'][0].value")
|
||||||
|
.value("1951-11-01"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier" +
|
||||||
|
".openalex'][0].value").value("W1775749144"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['oaire.citation.volume'][0]" +
|
||||||
|
".value")
|
||||||
|
.value("193"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['oaire.citation.issue'][0].value")
|
||||||
|
.value("1"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['oaire.citation" +
|
||||||
|
".startPage'][0].value")
|
||||||
|
.value("265"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['oaire.citation" +
|
||||||
|
".endPage'][0].value")
|
||||||
|
.value("275"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['oaire.version'][0].value")
|
||||||
|
.value("http://purl.org/coar/version/c_970fb48d4fbd8a85"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['oaire.citation.title'][0].value")
|
||||||
|
.value("Journal of Biological Chemistry"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.identifier.issn']",
|
||||||
|
Matchers.hasSize(3)))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.identifier.doi'][0].value")
|
||||||
|
.value("10.1016/s0021-9258(19)52451-6"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.language.iso'][0].value")
|
||||||
|
.value("en"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.title'][0].value")
|
||||||
|
.value("PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.subject']",
|
||||||
|
Matchers.hasSize(13)))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.subject'][9].value")
|
||||||
|
.value("Peer Review, Research standards"))
|
||||||
|
.andExpect(jsonPath("$._embedded.item.metadata['dc.subject'][12].value")
|
||||||
|
.value(
|
||||||
|
"Life Sciences Biochemistry, Genetics and Molecular Biology " +
|
||||||
|
"Molecular " +
|
||||||
|
"Biology Cancer and biochemical research"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.rights.license'][0].value")
|
||||||
|
.value("cc-by"))
|
||||||
|
.andExpect(
|
||||||
|
jsonPath("$._embedded.item.metadata['dc.type'][0].value")
|
||||||
|
.value("Article"))
|
||||||
|
.andExpect(jsonPath("$._embedded.collection.id", is(col1.getID().toString())));
|
||||||
|
|
||||||
|
// Capture arguments
|
||||||
|
ArgumentCaptor<String> urlCaptor = ArgumentCaptor.forClass(String.class);
|
||||||
|
ArgumentCaptor<Map<String, Map<String, String>>> paramsCaptor = ArgumentCaptor.forClass(Map.class);
|
||||||
|
|
||||||
|
verify(liveImportClient, times(1)).executeHttpGetRequest(anyInt(), urlCaptor.capture(),
|
||||||
|
paramsCaptor.capture());
|
||||||
|
|
||||||
|
// Assert the URL is correct
|
||||||
|
assertEquals(1, urlCaptor.getAllValues().size());
|
||||||
|
assertEquals("https://api.openalex.org/works/W1775749144", urlCaptor.getValue());
|
||||||
|
assertTrue(paramsCaptor.getValue().isEmpty());
|
||||||
|
} finally {
|
||||||
|
WorkspaceItemBuilder.deleteWorkspaceItem(idRef1.get());
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
Reference in New Issue
Block a user