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Move DSpace kernel codebase to dspace-api

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git-svn-id: http://scm.dspace.org/svn/repo/trunk@1957 9c30dcfa-912a-0410-8fc2-9e0234be79fd
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Mark Diggory
2007-05-23 16:23:06 +00:00
parent faa66ba48c
commit ba4e7f6b9e
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dspace-api/src/main/java/org/dspace/checker/CheckerCommand.java Normal file
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/*
* Copyright (c) 2004-2005, Hewlett-Packard Company and Massachusetts
* Institute of Technology. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are
* met:
*
* - Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
*
* - Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
*
* - Neither the name of the Hewlett-Packard Company nor the name of the
* Massachusetts Institute of Technology nor the names of their
* contributors may be used to endorse or promote products derived from
* this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
* ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
* A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
* HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
* BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
* OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
* TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
* USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
* DAMAGE.
*/
package org.dspace.checker;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
import java.security.DigestInputStream;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;
import java.sql.SQLException;
import java.util.Date;
import org.apache.log4j.Logger;
import org.apache.log4j.PropertyConfigurator;
import org.dspace.core.ConfigurationManager;
import org.dspace.core.Utils;
/**
* <p>
* Main class for the checksum checker tool, which calculates checksums for each
* bitstream whose ID is in the most_recent_checksum table, and compares it
* against the last calculated checksum for that bitstream.
* </p>
*
* @author Jim Downing
* @author Grace Carpenter
* @author Nathan Sarr
*
*
* @todo the accessor methods are currently unused - are they useful?
* @todo check for any existing resource problems
*/
public final class CheckerCommand
{
/** Usual Log4J logger. */
private static final Logger LOG = Logger.getLogger(CheckerCommand.class);
/** Default digest algorithm (MD5). */
private static final String DEFAULT_DIGEST_ALGORITHM = "MD5";
/** 4 Meg byte array for reading file. */
private int BYTE_ARRAY_SIZE = 4 * 1024;
/** BitstreamInfoDAO dependency. */
private BitstreamInfoDAO bitstreamInfoDAO = null;
/** BitstreamDAO dependency. */
private BitstreamDAO bitstreamDAO = null;
/**
* Checksum history Data access object
*/
private ChecksumHistoryDAO checksumHistoryDAO = null;
/** start time for current process. */
private Date processStartDate = null;
/**
* Dispatcher to be used for processing run.
*/
private BitstreamDispatcher dispatcher = null;
/**
* Container/logger with details about each bitstream and checksum results.
*/
private ChecksumResultsCollector collector = null;
/** Report all processing */
private boolean reportVerbose = false;
/**
* Default constructor uses DSpace plugin manager to construct dependencies.
*/
public CheckerCommand()
{
bitstreamInfoDAO = new BitstreamInfoDAO();
bitstreamDAO = new BitstreamDAO();
checksumHistoryDAO = new ChecksumHistoryDAO();
}
/**
* <p>
* Uses the options set up on this checker to determine a mode of execution,
* and then accepts bitstream ids from the dispatcher and checks their
* bitstreams against the db records.
* </p>
*
* <p>
* N.B. a valid BitstreamDispatcher must be provided using
* setBitstreamDispatcher before calling this method
* </p>
*/
public void process()
{
LOG.debug("Begin Checker Processing");
if (dispatcher == null)
{
throw new IllegalStateException("No BitstreamDispatcher provided");
}
if (collector == null)
{
collector = new ResultsLogger(processStartDate);
}
// update missing bitstreams that were entered into the
// bitstream table - this always done.
bitstreamInfoDAO.updateMissingBitstreams();
int id = dispatcher.next();
while (id != BitstreamDispatcher.SENTINEL)
{
LOG.debug("Processing bitstream id = " + id);
BitstreamInfo info = checkBitstream(id);
if (reportVerbose
|| (info.getChecksumCheckResult() != ChecksumCheckResults.CHECKSUM_MATCH))
{
collector.collect(info);
}
id = dispatcher.next();
}
}
/**
* Check a specified bitstream.
*
* @param id
* the bitstream id
*
* @return the information about the bitstream and its checksum data
*/
private BitstreamInfo checkBitstream(final int id)
{
// get bitstream info from bitstream table
BitstreamInfo info = bitstreamInfoDAO.findByBitstreamId(id);
// requested id was not found in bitstream
// or most_recent_checksum table
if (info == null)
{
// Note: this case should only occur if id is requested at
// command line, since ref integrity checks should
// prevent id from appearing in most_recent_checksum
// but not bitstream table, or vice versa
info = new BitstreamInfo(id);
processNullInfoBitstream(info);
}
else if (!info.getToBeProcessed())
{
// most_recent_checksum.to_be_processed is marked
// 'false' for this bitstream id.
// Do not do any db updates
info
.setChecksumCheckResult(ChecksumCheckResults.BITSTREAM_NOT_PROCESSED);
}
else if (info.getDeleted())
{
// bitstream id is marked 'deleted' in bitstream table.
processDeletedBitstream(info);
}
else
{
processBitstream(info);
}
return info;
}
/**
* Digest the stream and get the checksum value.
*
* @param stream
* InputStream to digest.
* @param algorithm
* the algorithm to use when digesting.
* @todo Document the algorithm parameter
* @return digest
*
* @throws java.security.NoSuchAlgorithmException
* if the requested algorithm is not provided by the system
* security provider.
* @throws java.io.IOException
* If an exception arises whilst reading the stream
*/
private String digestStream(InputStream stream, String algorithm)
throws java.security.NoSuchAlgorithmException, java.io.IOException
{
// create the digest stream
DigestInputStream dStream = new DigestInputStream(stream, MessageDigest
.getInstance(algorithm));
byte[] bytes = new byte[BYTE_ARRAY_SIZE];
// make sure all the data is read by the digester
while (dStream.read(bytes, 0, BYTE_ARRAY_SIZE) != -1)
{
// no-op
}
return Utils.toHex(dStream.getMessageDigest().digest());
}
/**
* Compares two checksums.
*
* @param checksumA
* the first checksum
* @param checksumB
* the second checksum
*
* @return a result code (constants defined in Util)
*/
private String compareChecksums(String checksumA, String checksumB)
{
String result = ChecksumCheckResults.CHECKSUM_NO_MATCH;
if ((checksumA == null) || (checksumB == null))
{
result = ChecksumCheckResults.CHECKSUM_PREV_NOT_FOUND;
}
else if (checksumA.equals(checksumB))
{
result = ChecksumCheckResults.CHECKSUM_MATCH;
}
return result;
}
/**
* Process bitstream that was marked 'deleted' in bitstream table. A deleted
* bitstream should only be checked once afterwards it should be marked
* 'to_be_processed=false'. Note that to_be_processed must be manually
* updated in db to allow for future processing.
*
* @param info
* a deleted bitstream.
*/
private void processDeletedBitstream(BitstreamInfo info)
{
info.setProcessStartDate(new Date());
info
.setChecksumCheckResult(ChecksumCheckResults.BITSTREAM_MARKED_DELETED);
info.setProcessStartDate(new Date());
info.setProcessEndDate(new Date());
info.setToBeProcessed(false);
bitstreamInfoDAO.update(info);
checksumHistoryDAO.insertHistory(info);
}
/**
* Process bitstream whose ID was not found in most_recent_checksum or
* bitstream table. No updates can be done. The missing bitstream is output
* to the log file.
*
* @param info
* A not found BitStreamInfo
* @todo is this method required?
*/
private void processNullInfoBitstream(BitstreamInfo info)
{
info.setInfoFound(false);
info.setProcessStartDate(new Date());
info.setProcessEndDate(new Date());
info
.setChecksumCheckResult(ChecksumCheckResults.BITSTREAM_INFO_NOT_FOUND);
}
/**
* <p>
* Process general case bistream.
* </p>
*
* <p>
* Note: bitstream will have timestamp indicating it was "checked", even if
* actual checksumming never took place.
* </p>
*
* @todo Why does bitstream have a timestamp indicating it's checked if
* checksumming doesn't occur?
*
* @param info
* BitstreamInfo to handle
*/
private void processBitstream(BitstreamInfo info)
{
info.setProcessStartDate(new Date());
if (info.getChecksumAlgorithm() == null)
{
info.setChecksumAlgorithm(DEFAULT_DIGEST_ALGORITHM);
}
try
{
InputStream bitstream = bitstreamDAO.getBitstream(info
.getBitstreamId());
info.setBitstreamFound(true);
String checksum = digestStream(bitstream, info
.getChecksumAlgorithm());
info.setCalculatedChecksum(checksum);
// compare new checksum to previous checksum
info.setChecksumCheckResult(compareChecksums(info
.getStoredChecksum(), info.getCalculatedChecksum()));
}
catch (IOException e)
{
// bitstream located, but file missing from asset store
info
.setChecksumCheckResult(ChecksumCheckResults.BITSTREAM_NOT_FOUND);
info.setToBeProcessed(false);
LOG.error("Error retrieving bitstream ID " + info.getBitstreamId()
+ " from " + "asset store.", e);
}
catch (SQLException e)
{
// ??this code only executes if an sql
// exception occurs in *DSpace* code, probably
// indicating a general db problem?
info
.setChecksumCheckResult(ChecksumCheckResults.BITSTREAM_INFO_NOT_FOUND);
LOG.error("Error retrieving metadata for bitstream ID "
+ info.getBitstreamId(), e);
}
catch (NoSuchAlgorithmException e)
{
info
.setChecksumCheckResult(ChecksumCheckResults.CHECKSUM_ALGORITHM_INVALID);
info.setToBeProcessed(false);
LOG.error("Invalid digest algorithm type for bitstream ID"
+ info.getBitstreamId(), e);
}
finally
{
info.setProcessEndDate(new Date());
// record new checksum and comparison result in db
bitstreamInfoDAO.update(info);
checksumHistoryDAO.insertHistory(info);
}
}
/**
* Get dispatcher being used by this run of the checker.
*
* @return the dispatcher being used by this run.
*/
public BitstreamDispatcher getDispatcher()
{
return dispatcher;
}
/**
* Set the dispatcher to be used by this run of the checker.
*
* @param dispatcher
* Dispatcher to use.
*/
public void setDispatcher(BitstreamDispatcher dispatcher)
{
this.dispatcher = dispatcher;
}
/**
* Get the collector that holds/logs the results for this process run.
*
* @return The ChecksumResultsCollecter being used.
*/
public ChecksumResultsCollector getCollector()
{
return collector;
}
/**
* Set the collector that holds/logs the results for this process run.
*
* @param collector
* the collector to be used for this run
*/
public void setCollector(ChecksumResultsCollector collector)
{
this.collector = collector;
}
/**
* Get time at which checker process began.
*
* @return start time
*/
public Date getProcessStartDate()
{
return processStartDate;
}
/**
* Set time at which checker process began.
*
* @param startDate
* start time
*/
public void setProcessStartDate(Date startDate)
{
processStartDate = startDate;
}
/**
* Determine if any errors are reported
*
* @return true if only errors reported
*/
public boolean isReportVerbose()
{
return reportVerbose;
}
/**
* Set report errors only
*
* @param reportErrorsOnly
* true to report only errors in the logs.
*/
public void setReportVerbose(boolean reportVerbose)
{
this.reportVerbose = reportVerbose;
}
}