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Merge branch 'master' into DS-3910

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This commit is contained in:
Pablo
2018-08-02 11:15:11 -05:00
committed by GitHub
parent e55846b212 628c1250c2
commit c076c99686
98 changed files with 1606 additions and 220 deletions
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4
dspace-api/pom.xml
View File

@@ -363,8 +363,8 @@
<artifactId>commons-codec</artifactId>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>

2
dspace-api/src/main/java/org/dspace/administer/CommunityFiliator.java
View File

@@ -17,7 +17,7 @@ import org.apache.commons.cli.CommandLineParser;
import org.apache.commons.cli.HelpFormatter;
import org.apache.commons.cli.Options;
import org.apache.commons.cli.PosixParser;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Community;
import org.dspace.content.factory.ContentServiceFactory;

6
dspace-api/src/main/java/org/dspace/app/itemexport/ItemExportServiceImpl.java
View File

@@ -547,7 +547,7 @@ public class ItemExportServiceImpl implements ItemExportService {
List<Bitstream> bitstreams = bundle.getBitstreams();
for (Bitstream bitstream : bitstreams) {
// add up the size
size += bitstream.getSize();
size += bitstream.getSizeBytes();
}
}
items.add(item.getID());
@@ -574,7 +574,7 @@ public class ItemExportServiceImpl implements ItemExportService {
List<Bitstream> bitstreams = bundle.getBitstreams();
for (Bitstream bitstream : bitstreams) {
// add up the size
size += bitstream.getSize();
size += bitstream.getSizeBytes();
}
}
items.add(item.getID());
@@ -593,7 +593,7 @@ public class ItemExportServiceImpl implements ItemExportService {
List<Bitstream> bitstreams = bundle.getBitstreams();
for (Bitstream bitstream : bitstreams) {
// add up the size
size += bitstream.getSize();
size += bitstream.getSizeBytes();
}
}
ArrayList<UUID> items = new ArrayList<>();

2
dspace-api/src/main/java/org/dspace/app/itemimport/ItemImportServiceImpl.java
View File

@@ -52,7 +52,7 @@ import gr.ekt.bte.core.TransformationSpec;
import gr.ekt.bte.dataloader.FileDataLoader;
import gr.ekt.bteio.generators.DSpaceOutputGenerator;
import gr.ekt.bteio.loaders.OAIPMHDataLoader;
import org.apache.commons.collections.ComparatorUtils;
import org.apache.commons.collections4.ComparatorUtils;
import org.apache.commons.io.FileDeleteStrategy;
import org.apache.commons.io.FileUtils;
import org.apache.commons.lang.RandomStringUtils;

2
dspace-api/src/main/java/org/dspace/app/mediafilter/MediaFilterServiceImpl.java
View File

@@ -220,7 +220,7 @@ public class MediaFilterServiceImpl implements MediaFilterService, InitializingB
} catch (Exception e) {
String handle = myItem.getHandle();
List<Bundle> bundles = myBitstream.getBundles();
long size = myBitstream.getSize();
long size = myBitstream.getSizeBytes();
String checksum = myBitstream.getChecksum() + " (" + myBitstream.getChecksumAlgorithm() + ")";
int assetstore = myBitstream.getStoreNumber();

2
dspace-api/src/main/java/org/dspace/app/util/GoogleBitstreamComparator.java
View File

@@ -86,7 +86,7 @@ public class GoogleBitstreamComparator implements Comparator<Bitstream> {
if (priority1 > priority2) {
return 1;
} else if (priority1 == priority2) {
if (b1.getSize() <= b2.getSize()) {
if (b1.getSizeBytes() <= b2.getSizeBytes()) {
return 1;
} else {
return -1;

2
dspace-api/src/main/java/org/dspace/app/util/SyndicationFeed.java
View File

@@ -366,7 +366,7 @@ public class SyndicationFeed {
if (ArrayUtils.contains(podcastableMIMETypes, mime)) {
SyndEnclosure enc = new SyndEnclosureImpl();
enc.setType(bit.getFormat(context).getMIMEType());
enc.setLength(bit.getSize());
enc.setLength(bit.getSizeBytes());
enc.setUrl(urlOfBitstream(request, bit));
enclosures.add(enc);
} else {

2
dspace-api/src/main/java/org/dspace/app/util/Util.java
View File

@@ -22,7 +22,7 @@ import java.util.Set;
import java.util.UUID;
import javax.servlet.http.HttpServletRequest;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.collections4.ListUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.content.Collection;

6
dspace-api/src/main/java/org/dspace/authenticate/AuthenticationMethod.java
View File

@@ -210,4 +210,10 @@ public interface AuthenticationMethod {
public String loginPageURL(Context context,
HttpServletRequest request,
HttpServletResponse response);
/**
* Returns a short name that uniquely identifies this authentication method
* @return The authentication method name
*/
public String getName();
}

9
dspace-api/src/main/java/org/dspace/authenticate/IPAuthentication.java
View File

@@ -9,6 +9,7 @@ package org.dspace.authenticate;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
@@ -16,7 +17,6 @@ import java.util.UUID;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.collections.ListUtils;
import org.apache.log4j.Logger;
import org.dspace.core.ConfigurationManager;
import org.dspace.core.Context;
@@ -164,7 +164,7 @@ public class IPAuthentication implements AuthenticationMethod {
public List<Group> getSpecialGroups(Context context, HttpServletRequest request)
throws SQLException {
if (request == null) {
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
List<Group> groups = new ArrayList<Group>();
@@ -276,4 +276,9 @@ public class IPAuthentication implements AuthenticationMethod {
HttpServletResponse response) {
return null;
}
@Override
public String getName() {
return "ip";
}
}

11
dspace-api/src/main/java/org/dspace/authenticate/LDAPAuthentication.java
View File

@@ -10,6 +10,7 @@ package org.dspace.authenticate;
import java.io.IOException;
import java.sql.SQLException;
import java.util.Arrays;
import java.util.Collections;
import java.util.Hashtable;
import java.util.List;
import javax.naming.NamingEnumeration;
@@ -27,7 +28,6 @@ import javax.naming.ldap.StartTlsResponse;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authenticate.factory.AuthenticateServiceFactory;
@@ -136,7 +136,7 @@ public class LDAPAuthentication
log.warn(LogManager.getHeader(context,
"ldap_specialgroup",
"Group defined in login.specialgroup does not exist"));
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
} else {
return Arrays.asList(ldapGroup);
}
@@ -145,7 +145,7 @@ public class LDAPAuthentication
} catch (Exception npe) {
// The user is not an LDAP user, so we don't need to worry about them
}
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
/*
@@ -639,6 +639,11 @@ public class LDAPAuthentication
return null;
}
@Override
public String getName() {
return "ldap";
}
/*
* Add authenticated users to the group defined in dspace.cfg by
* the authentication-ldap.login.groupmap.* key.

11
dspace-api/src/main/java/org/dspace/authenticate/PasswordAuthentication.java
View File

@@ -9,11 +9,11 @@ package org.dspace.authenticate;
import java.sql.SQLException;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.core.Context;
@@ -151,7 +151,7 @@ public class PasswordAuthentication
"password_specialgroup",
"Group defined in modules/authentication-password.cfg login" +
".specialgroup does not exist"));
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
} else {
return Arrays.asList(specialGroup);
}
@@ -160,7 +160,7 @@ public class PasswordAuthentication
} catch (Exception e) {
log.error(LogManager.getHeader(context, "getSpecialGroups", ""), e);
}
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
/**
@@ -242,4 +242,9 @@ public class PasswordAuthentication
HttpServletResponse response) {
return null;
}
@Override
public String getName() {
return "password";
}
}

11
dspace-api/src/main/java/org/dspace/authenticate/ShibAuthentication.java
View File

@@ -12,6 +12,7 @@ import java.net.URLEncoder;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.Enumeration;
import java.util.HashMap;
import java.util.HashSet;
@@ -22,7 +23,6 @@ import java.util.UUID;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authenticate.factory.AuthenticateServiceFactory;
@@ -288,7 +288,7 @@ public class ShibAuthentication implements AuthenticationMethod {
if (request == null ||
context.getCurrentUser() == null ||
request.getSession().getAttribute("shib.authenticated") == null) {
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
// If we have already calculated the special groups then return them.
@@ -404,7 +404,7 @@ public class ShibAuthentication implements AuthenticationMethod {
return new ArrayList<>(groups);
} catch (Throwable t) {
log.error("Unable to validate any sepcial groups this user may belong too because of an exception.", t);
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
}
@@ -538,6 +538,11 @@ public class ShibAuthentication implements AuthenticationMethod {
}
}
@Override
public String getName() {
return "shibboleth";
}
/**
* Identify an existing EPerson based upon the shibboleth attributes provided on
* the request object. There are three cases where this can occurr, each as

11
dspace-api/src/main/java/org/dspace/authenticate/X509Authentication.java
View File

@@ -21,6 +21,7 @@ import java.security.cert.CertificateFactory;
import java.security.cert.X509Certificate;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Enumeration;
import java.util.List;
import java.util.StringTokenizer;
@@ -28,7 +29,6 @@ import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import javax.servlet.http.HttpSession;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.lang.ArrayUtils;
import org.apache.log4j.Logger;
import org.dspace.authenticate.factory.AuthenticateServiceFactory;
@@ -442,7 +442,7 @@ public class X509Authentication implements AuthenticationMethod {
public List<Group> getSpecialGroups(Context context, HttpServletRequest request)
throws SQLException {
if (request == null) {
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
Boolean authenticated = false;
@@ -472,7 +472,7 @@ public class X509Authentication implements AuthenticationMethod {
return groups;
}
return ListUtils.EMPTY_LIST;
return Collections.EMPTY_LIST;
}
/**
@@ -589,4 +589,9 @@ public class X509Authentication implements AuthenticationMethod {
HttpServletResponse response) {
return loginPageURL;
}
@Override
public String getName() {
return "x509";
}
}

2
dspace-api/src/main/java/org/dspace/authority/indexer/DSpaceAuthorityIndexer.java
View File

@@ -14,7 +14,7 @@ import java.util.Iterator;
import java.util.List;
import java.util.Map;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authority.AuthorityValue;

2
dspace-api/src/main/java/org/dspace/authorize/AuthorizeServiceImpl.java
View File

@@ -15,7 +15,7 @@ import java.util.LinkedList;
import java.util.List;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.dspace.authorize.service.AuthorizeService;
import org.dspace.authorize.service.ResourcePolicyService;

2
dspace-api/src/main/java/org/dspace/authorize/ResourcePolicyServiceImpl.java
View File

@@ -14,7 +14,7 @@ import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.ObjectUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.dao.ResourcePolicyDAO;

2
dspace-api/src/main/java/org/dspace/checker/CheckerCommand.java
View File

@@ -12,7 +12,7 @@ import java.sql.SQLException;
import java.util.Date;
import java.util.Map;
import org.apache.commons.collections.MapUtils;
import org.apache.commons.collections4.MapUtils;
import org.apache.log4j.Logger;
import org.dspace.checker.factory.CheckerServiceFactory;
import org.dspace.checker.service.ChecksumHistoryService;

2
dspace-api/src/main/java/org/dspace/checker/ResultsLogger.java
View File

@@ -92,7 +92,7 @@ public class ResultsLogger implements ChecksumResultsCollector {
LOG.info(msg("internal-id") + ": " + bitstream.getInternalId());
LOG.info(msg("name") + ": " + bitstream.getName());
LOG.info(msg("store-number") + ": " + bitstream.getStoreNumber());
LOG.info(msg("size") + ": " + bitstream.getSize());
LOG.info(msg("size") + ": " + bitstream.getSizeBytes());
LOG.info(msg("bitstream-format") + ": " + (bitstream.getFormat(context) != null ? bitstream.getFormat(context)
.getID() : "-1"));
LOG.info(msg("user-format-description") + ": "

2
dspace-api/src/main/java/org/dspace/checker/SimpleReporterServiceImpl.java
View File

@@ -306,7 +306,7 @@ public class SimpleReporterServiceImpl implements SimpleReporterService {
info.getInternalId()).append("\n");
buf.append(msg("name")).append(" = ").append(info.getName())
.append("\n");
buf.append(msg("size")).append(" = ").append(info.getSize())
buf.append(msg("size")).append(" = ").append(info.getSizeBytes())
.append("\n");
buf.append(msg("source")).append(" = ").append(info.getSource())
.append("\n");

2
dspace-api/src/main/java/org/dspace/content/Bitstream.java
View File

@@ -212,7 +212,7 @@ public class Bitstream extends DSpaceObject implements DSpaceObjectLegacySupport
*
* @return the size in bytes
*/
public long getSize() {
public long getSizeBytes() {
return sizeBytes;
}

2
dspace-api/src/main/java/org/dspace/content/BitstreamFormatServiceImpl.java
View File

@@ -11,7 +11,7 @@ import java.sql.SQLException;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.authorize.service.AuthorizeService;

2
dspace-api/src/main/java/org/dspace/content/BitstreamServiceImpl.java
View File

@@ -14,7 +14,7 @@ import java.util.Iterator;
import java.util.List;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;

2
dspace-api/src/main/java/org/dspace/content/BundleServiceImpl.java
View File

@@ -15,7 +15,7 @@ import java.util.LinkedList;
import java.util.List;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeConfiguration;

2
dspace-api/src/main/java/org/dspace/content/CollectionServiceImpl.java
View File

@@ -19,7 +19,7 @@ import java.util.Map;
import java.util.MissingResourceException;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.app.util.AuthorizeUtil;

2
dspace-api/src/main/java/org/dspace/content/CommunityServiceImpl.java
View File

@@ -16,7 +16,7 @@ import java.util.List;
import java.util.MissingResourceException;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.app.util.AuthorizeUtil;

2
dspace-api/src/main/java/org/dspace/content/DSpaceObject.java
View File

@@ -24,7 +24,7 @@ import javax.persistence.OrderBy;
import javax.persistence.Table;
import javax.persistence.Transient;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.ResourcePolicy;
import org.dspace.core.ReloadableEntity;
import org.dspace.handle.Handle;

2
dspace-api/src/main/java/org/dspace/content/DSpaceObjectServiceImpl.java
View File

@@ -16,7 +16,7 @@ import java.util.List;
import java.util.Map;
import java.util.StringTokenizer;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.ArrayUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;

2
dspace-api/src/main/java/org/dspace/content/InstallItemServiceImpl.java
View File

@@ -233,7 +233,7 @@ public class InstallItemServiceImpl implements InstallItemService {
// Add sizes and checksums of bitstreams
for (Bitstream bitstream : bitstreams) {
myMessage.append(bitstream.getName()).append(": ")
.append(bitstream.getSize()).append(" bytes, checksum: ")
.append(bitstream.getSizeBytes()).append(" bytes, checksum: ")
.append(bitstream.getChecksum()).append(" (")
.append(bitstream.getChecksumAlgorithm()).append(")\n");
}

2
dspace-api/src/main/java/org/dspace/content/ItemServiceImpl.java
View File

@@ -16,7 +16,7 @@ import java.util.Iterator;
import java.util.List;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.app.util.AuthorizeUtil;

2
dspace-api/src/main/java/org/dspace/content/MetadataFieldServiceImpl.java
View File

@@ -11,7 +11,7 @@ import java.io.IOException;
import java.sql.SQLException;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.authorize.service.AuthorizeService;

2
dspace-api/src/main/java/org/dspace/content/crosswalk/AIPTechMDCrosswalk.java
View File

@@ -12,7 +12,7 @@ import java.sql.SQLException;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Bitstream;

2
dspace-api/src/main/java/org/dspace/content/crosswalk/OREDisseminationCrosswalk.java
View File

@@ -236,7 +236,7 @@ public class OREDisseminationCrosswalk
bs.getName()) + "?sequence=" + bs.getSequenceID());
arLink.setAttribute("title", bs.getName());
arLink.setAttribute("type", bs.getFormat(context).getMIMEType());
arLink.setAttribute("length", Long.toString(bs.getSize()));
arLink.setAttribute("length", Long.toString(bs.getSizeBytes()));
aggregation.addContent(arLink);

6
dspace-api/src/main/java/org/dspace/content/crosswalk/PREMISCrosswalk.java
View File

@@ -108,9 +108,9 @@ public class PREMISCrosswalk
if (ssize != null) {
try {
int size = Integer.parseInt(ssize);
if (bitstream.getSize() != size) {
if (bitstream.getSizeBytes() != size) {
throw new MetadataValidationException(
"Bitstream size (" + String.valueOf(bitstream.getSize()) +
"Bitstream size (" + String.valueOf(bitstream.getSizeBytes()) +
") does not match size in PREMIS (" + ssize + "), rejecting it.");
}
} catch (NumberFormatException ne) {
@@ -274,7 +274,7 @@ public class PREMISCrosswalk
// size
Element size = new Element("size", PREMIS_NS);
size.setText(String.valueOf(bitstream.getSize()));
size.setText(String.valueOf(bitstream.getSizeBytes()));
ochar.addContent(size);
// Punt and set formatName to the MIME type; the best we can

8
dspace-api/src/main/java/org/dspace/content/dao/impl/CommunityDAOImpl.java
View File

@@ -9,9 +9,9 @@ package org.dspace.content.dao.impl;
import java.sql.SQLException;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.ListUtils;
import org.dspace.content.Community;
import org.dspace.content.MetadataField;
import org.dspace.content.dao.CommunityDAO;
@@ -58,7 +58,7 @@ public class CommunityDAOImpl extends AbstractHibernateDSODAO<Community> impleme
queryBuilder.append("SELECT ").append(Community.class.getSimpleName()).append(" FROM Community as ")
.append(Community.class.getSimpleName()).append(" ");
addMetadataLeftJoin(queryBuilder, Community.class.getSimpleName(), Arrays.asList(sortField));
addMetadataSortQuery(queryBuilder, Arrays.asList(sortField), ListUtils.EMPTY_LIST);
addMetadataSortQuery(queryBuilder, Arrays.asList(sortField), Collections.EMPTY_LIST);
Query query = createQuery(context, queryBuilder.toString());
if (offset != null) {
@@ -83,8 +83,8 @@ public class CommunityDAOImpl extends AbstractHibernateDSODAO<Community> impleme
StringBuilder queryBuilder = new StringBuilder();
queryBuilder.append("SELECT community FROM Community as community ");
addMetadataLeftJoin(queryBuilder, Community.class.getSimpleName().toLowerCase(), Arrays.asList(sortField));
addMetadataValueWhereQuery(queryBuilder, ListUtils.EMPTY_LIST, null, " community.parentCommunities IS EMPTY");
addMetadataSortQuery(queryBuilder, Arrays.asList(sortField), ListUtils.EMPTY_LIST);
addMetadataValueWhereQuery(queryBuilder, Collections.EMPTY_LIST, null, " community.parentCommunities IS EMPTY");
addMetadataSortQuery(queryBuilder, Arrays.asList(sortField), Collections.EMPTY_LIST);
Query query = createQuery(context, queryBuilder.toString());
query.setParameter(sortField.toString(), sortField.getID());

21
dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSDisseminator.java
View File

@@ -53,7 +53,6 @@ import edu.harvard.hul.ois.mets.helper.MetsException;
import edu.harvard.hul.ois.mets.helper.MetsValidator;
import edu.harvard.hul.ois.mets.helper.MetsWriter;
import edu.harvard.hul.ois.mets.helper.PreformedXML;
import org.apache.log4j.Logger;
import org.dspace.app.util.Util;
import org.dspace.authorize.AuthorizeException;
import org.dspace.authorize.factory.AuthorizeServiceFactory;
@@ -86,6 +85,8 @@ import org.jdom.Element;
import org.jdom.Namespace;
import org.jdom.output.Format;
import org.jdom.output.XMLOutputter;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Base class for disseminator of
@@ -124,7 +125,7 @@ public abstract class AbstractMETSDisseminator
/**
* log4j category
*/
private static Logger log = Logger.getLogger(AbstractMETSDisseminator.class);
private static final Logger log = LoggerFactory.getLogger(AbstractMETSDisseminator.class);
// JDOM xml output writer - indented format for readability.
protected static XMLOutputter outputter = new XMLOutputter(Format.getPrettyFormat());
@@ -442,7 +443,7 @@ public abstract class AbstractMETSDisseminator
log.debug(new StringBuilder().append("Writing CONTENT stream of bitstream(")
.append(bitstream.getID()).append(") to Zip: ")
.append(zname).append(", size=")
.append(bitstream.getSize()).toString());
.append(bitstream.getSizeBytes()).toString());
}
if (lmTime != 0) {
ze.setTime(lmTime);
@@ -451,7 +452,7 @@ public abstract class AbstractMETSDisseminator
// contents are unchanged
ze.setTime(DEFAULT_MODIFIED_DATE);
}
ze.setSize(auth ? bitstream.getSize() : 0);
ze.setSize(auth ? bitstream.getSizeBytes() : 0);
zip.putNextEntry(ze);
if (auth) {
InputStream input = bitstreamService.retrieve(context, bitstream);
@@ -483,10 +484,12 @@ public abstract class AbstractMETSDisseminator
String zname = makeBitstreamURL(context, logoBs, params);
ZipEntry ze = new ZipEntry(zname);
if (log.isDebugEnabled()) {
log.debug("Writing CONTENT stream of bitstream(" + String
.valueOf(logoBs.getID()) + ") to Zip: " + zname + ", size=" + String.valueOf(logoBs.getSize()));
log.debug("Writing CONTENT stream of bitstream({}) to Zip: {}, size={}",
String.valueOf(logoBs.getID()),
zname,
String.valueOf(logoBs.getSizeBytes()));
}
ze.setSize(logoBs.getSize());
ze.setSize(logoBs.getSizeBytes());
//Set a default modified date so that checksum of Zip doesn't change if Zip contents are unchanged
ze.setTime(DEFAULT_MODIFIED_DATE);
zip.putNextEntry(ze);
@@ -921,7 +924,7 @@ public abstract class AbstractMETSDisseminator
}
file.setGROUPID(groupID);
file.setMIMETYPE(bitstream.getFormat(context).getMIMEType());
file.setSIZE(auth ? bitstream.getSize() : 0);
file.setSIZE(auth ? bitstream.getSizeBytes() : 0);
// Translate checksum and type to METS
String csType = bitstream.getChecksumAlgorithm();
@@ -1077,7 +1080,7 @@ public abstract class AbstractMETSDisseminator
String fileID = gensym("logo");
file.setID(fileID);
file.setMIMETYPE(logoBs.getFormat(context).getMIMEType());
file.setSIZE(logoBs.getSize());
file.setSIZE(logoBs.getSizeBytes());
// Translate checksum and type to METS
String csType = logoBs.getChecksumAlgorithm();

2
dspace-api/src/main/java/org/dspace/content/packager/AbstractMETSIngester.java
View File

@@ -19,7 +19,7 @@ import java.util.List;
import java.util.zip.ZipEntry;
import java.util.zip.ZipFile;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Bitstream;

2
dspace-api/src/main/java/org/dspace/content/packager/DSpaceAIPDisseminator.java
View File

@@ -27,7 +27,7 @@ import edu.harvard.hul.ois.mets.StructMap;
import edu.harvard.hul.ois.mets.Type;
import edu.harvard.hul.ois.mets.helper.MetsException;
import edu.harvard.hul.ois.mets.helper.PCData;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.ArrayUtils;
import org.apache.log4j.Logger;
import org.dspace.app.util.Util;

2
dspace-api/src/main/java/org/dspace/content/packager/PackageUtils.java
View File

@@ -20,7 +20,7 @@ import java.util.Map;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Bitstream;

2
dspace-api/src/main/java/org/dspace/core/AbstractHibernateDAO.java
View File

@@ -12,7 +12,7 @@ import java.util.Iterator;
import java.util.List;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.hibernate.Criteria;
import org.hibernate.Query;
import org.hibernate.Session;

6
dspace-api/src/main/java/org/dspace/core/AbstractHibernateDSODAO.java
View File

@@ -9,10 +9,10 @@ package org.dspace.core;
import java.sql.SQLException;
import java.util.Collection;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.dspace.content.DSpaceObject;
import org.dspace.content.MetadataField;
@@ -115,7 +115,7 @@ public abstract class AbstractHibernateDSODAO<T extends DSpaceObject> extends Ab
*/
protected void addMetadataSortQuery(StringBuilder query, List<MetadataField> metadataSortFields,
List<String> columnSortFields) {
addMetadataSortQuery(query, metadataSortFields, columnSortFields, ListUtils.EMPTY_LIST);
addMetadataSortQuery(query, metadataSortFields, columnSortFields, Collections.EMPTY_LIST);
}
/**

2
dspace-api/src/main/java/org/dspace/ctask/general/BitstreamsIntoMetadata.java
View File

@@ -116,7 +116,7 @@ public class BitstreamsIntoMetadata extends AbstractCurationTask {
protected void addMetadata(Item item, Bitstream bitstream, String type) throws SQLException {
String value = bitstream.getFormat(Curator.curationContext()).getMIMEType() + "##";
value += bitstream.getName() + "##";
value += bitstream.getSize() + "##";
value += bitstream.getSizeBytes() + "##";
value += item.getHandle() + "##";
value += bitstream.getSequenceID() + "##";
value += bitstream.getChecksum() + "##";

4
dspace-api/src/main/java/org/dspace/discovery/FullTextContentStreams.java
View File

@@ -24,7 +24,7 @@ import javax.annotation.Nullable;
import com.google.common.base.Function;
import com.google.common.collect.Iterables;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.io.Charsets;
import org.apache.commons.lang3.StringUtils;
import org.apache.log4j.Logger;
@@ -168,7 +168,7 @@ public class FullTextContentStreams extends ContentStreamBase {
}
public long getSize() {
return bitstream.getSize();
return bitstream.getSizeBytes();
}
public InputStream getInputStream() throws SQLException, IOException, AuthorizeException {

6
dspace-api/src/main/java/org/dspace/discovery/SolrServiceImpl.java
View File

@@ -32,9 +32,9 @@ import java.util.TimeZone;
import java.util.UUID;
import java.util.Vector;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections.MapUtils;
import org.apache.commons.collections.Transformer;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.collections4.MapUtils;
import org.apache.commons.collections4.Transformer;
import org.apache.commons.lang.ArrayUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.lang.time.DateFormatUtils;

2
dspace-api/src/main/java/org/dspace/eperson/EPersonServiceImpl.java
View File

@@ -17,7 +17,7 @@ import java.util.Set;
import java.util.UUID;
import org.apache.commons.codec.DecoderException;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;

2
dspace-api/src/main/java/org/dspace/eperson/GroupServiceImpl.java
View File

@@ -17,7 +17,7 @@ import java.util.Map;
import java.util.Set;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.ObjectUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.Pair;

2
dspace-api/src/main/java/org/dspace/eperson/RegistrationDataServiceImpl.java
View File

@@ -11,7 +11,7 @@ import java.sql.SQLException;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
import org.dspace.eperson.dao.RegistrationDataDAO;

11
dspace-api/src/main/java/org/dspace/eperson/dao/impl/EPersonDAOImpl.java
View File

@@ -16,8 +16,7 @@ import java.util.List;
import java.util.Set;
import java.util.UUID;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections.ListUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang3.StringUtils;
import org.dspace.content.MetadataField;
import org.dspace.core.AbstractHibernateDSODAO;
@@ -84,7 +83,7 @@ public class EPersonDAOImpl extends AbstractHibernateDSODAO<EPerson> implements
@Override
public int searchResultCount(Context context, String query, List<MetadataField> queryFields) throws SQLException {
String queryString = "SELECT count(*) FROM EPerson as " + EPerson.class.getSimpleName().toLowerCase();
Query hibernateQuery = getSearchQuery(context, queryString, query, queryFields, ListUtils.EMPTY_LIST, null);
Query hibernateQuery = getSearchQuery(context, queryString, query, queryFields, Collections.EMPTY_LIST, null);
return count(hibernateQuery);
}
@@ -96,14 +95,14 @@ public class EPersonDAOImpl extends AbstractHibernateDSODAO<EPerson> implements
.toLowerCase() + " FROM EPerson as " + EPerson.class
.getSimpleName().toLowerCase();
List<MetadataField> sortFields = ListUtils.EMPTY_LIST;
List<MetadataField> sortFields = Collections.EMPTY_LIST;
if (metadataSortField != null) {
sortFields = Collections.singletonList(metadataSortField);
}
Query query = getSearchQuery(context, queryString, null, ListUtils.EMPTY_LIST, sortFields, sortField, pageSize,
offset);
Query query = getSearchQuery(context, queryString, null, Collections.EMPTY_LIST, sortFields,
sortField, pageSize, offset);
return list(query);
}

2
dspace-api/src/main/java/org/dspace/handle/HandleServiceImpl.java
View File

@@ -11,7 +11,7 @@ import java.sql.SQLException;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.content.DSpaceObject;

2
dspace-api/src/main/java/org/dspace/importer/external/datamodel/Query.java vendored
View File

@@ -10,7 +10,7 @@ package org.dspace.importer.external.datamodel;
import java.util.Collection;
import org.apache.commons.collections.map.MultiValueMap;
import org.apache.commons.collections4.map.MultiValueMap;
/**
* Represents a query to a source. Subclasses may enforce stricter typing or more verbose setting of parameters.

4
dspace-api/src/main/java/org/dspace/storage/bitstore/BitstreamStorageServiceImpl.java
View File

@@ -16,7 +16,7 @@ import java.util.List;
import java.util.Map;
import java.util.UUID;
import org.apache.commons.collections.MapUtils;
import org.apache.commons.collections4.MapUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.checker.service.ChecksumHistoryService;
@@ -381,7 +381,7 @@ public class BitstreamStorageServiceImpl implements BitstreamStorageService, Ini
log.info("Copying bitstream:" + bitstream
.getID() + " from assetstore[" + assetstoreSource + "] to assetstore[" + assetstoreDestination + "] " +
"Name:" + bitstream
.getName() + ", SizeBytes:" + bitstream.getSize());
.getName() + ", SizeBytes:" + bitstream.getSizeBytes());
InputStream inputStream = retrieve(context, bitstream);
stores.get(assetstoreDestination).put(bitstream, inputStream);

2
dspace-api/src/main/java/org/dspace/versioning/VersionHistoryServiceImpl.java
View File

@@ -12,7 +12,7 @@ import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Item;
import org.dspace.core.Context;

2
dspace-api/src/main/java/org/dspace/workflowbasic/BasicWorkflowServiceImpl.java
View File

@@ -20,7 +20,7 @@ import java.util.ResourceBundle;
import java.util.UUID;
import javax.mail.MessagingException;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;

2
dspace-api/src/main/java/org/dspace/xmlworkflow/XmlWorkflowServiceImpl.java
View File

@@ -21,7 +21,7 @@ import java.util.UUID;
import javax.mail.MessagingException;
import javax.servlet.http.HttpServletRequest;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.authorize.ResourcePolicy;

2
dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/ClaimedTaskServiceImpl.java
View File

@@ -12,7 +12,7 @@ import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;

2
dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/InProgressUserServiceImpl.java
View File

@@ -11,7 +11,7 @@ import java.sql.SQLException;
import java.util.Collections;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;

2
dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/PoolTaskServiceImpl.java
View File

@@ -15,7 +15,7 @@ import java.util.Iterator;
import java.util.List;
import java.util.Set;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;

2
dspace-api/src/main/java/org/dspace/xmlworkflow/storedcomponents/WorkflowItemRoleServiceImpl.java
View File

@@ -12,7 +12,7 @@ import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;

60
dspace-api/src/test/java/org/dspace/app/util/GoogleBitstreamComparatorTest.java
View File

@@ -94,9 +94,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("application/pdf");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/pdf");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/pdf");
when(bitstream1.getSize()).thenReturn(Long.valueOf(100));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(100));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -136,9 +136,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat2.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/postscript");
when(bitstream1.getSize()).thenReturn(Long.valueOf(100));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(100));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -157,9 +157,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("application/pdf");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/pdf");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/pdf");
when(bitstream1.getSize()).thenReturn(Long.valueOf(200));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(200));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(200));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -181,9 +181,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("unknown");
when(bitstreamFormat2.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat3.getMIMEType()).thenReturn("text/richtext");
when(bitstream1.getSize()).thenReturn(Long.valueOf(400));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(400));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -203,9 +203,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("unknown");
when(bitstreamFormat2.getMIMEType()).thenReturn("unknown");
when(bitstreamFormat3.getMIMEType()).thenReturn("unknown");
when(bitstream1.getSize()).thenReturn(Long.valueOf(200));
when(bitstream2.getSize()).thenReturn(Long.valueOf(300));
when(bitstream3.getSize()).thenReturn(Long.valueOf(100));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(300));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(100));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -242,9 +242,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
*/
@Test
public void testNoMimeType() throws Exception {
when(bitstream1.getSize()).thenReturn(Long.valueOf(200));
when(bitstream2.getSize()).thenReturn(Long.valueOf(300));
when(bitstream3.getSize()).thenReturn(Long.valueOf(100));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(300));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(100));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -295,9 +295,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/msword");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/postscript");
when(bitstream1.getSize()).thenReturn(Long.valueOf(100));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(100));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -318,9 +318,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/msword");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/postscript");
when(bitstream1.getSize()).thenReturn(Long.valueOf(100));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(100));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -342,9 +342,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/msword");
when(bitstreamFormat3.getMIMEType()).thenReturn("application/postscript");
when(bitstream1.getSize()).thenReturn(Long.valueOf(100));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(300));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(100));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(300));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));
@@ -362,9 +362,9 @@ public class GoogleBitstreamComparatorTest extends AbstractUnitTest {
when(bitstreamFormat1.getMIMEType()).thenReturn("text/richtext");
when(bitstreamFormat2.getMIMEType()).thenReturn("application/msword");
when(bitstreamFormat3.getMIMEType()).thenReturn("audio/x-wav");
when(bitstream1.getSize()).thenReturn(Long.valueOf(300));
when(bitstream2.getSize()).thenReturn(Long.valueOf(200));
when(bitstream3.getSize()).thenReturn(Long.valueOf(100));
when(bitstream1.getSizeBytes()).thenReturn(Long.valueOf(300));
when(bitstream2.getSizeBytes()).thenReturn(Long.valueOf(200));
when(bitstream3.getSizeBytes()).thenReturn(Long.valueOf(100));
List<Bitstream> toSort = bundle.getBitstreams();
Collections.sort(toSort, new GoogleBitstreamComparator(context, settings));

4
dspace-api/src/test/java/org/dspace/content/BitstreamFormatTest.java
View File

@@ -18,10 +18,10 @@ import static org.junit.Assert.fail;
import java.sql.SQLException;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
import mockit.NonStrictExpectations;
import org.apache.commons.collections.ListUtils;
import org.apache.log4j.Logger;
import org.dspace.AbstractUnitTest;
import org.dspace.authorize.AuthorizeException;
@@ -546,7 +546,7 @@ public class BitstreamFormatTest extends AbstractUnitTest {
assertThat("setExtensions 4", bf.getExtensions().get(1), equalTo("2"));
assertThat("setExtensions 5", bf.getExtensions().get(2), equalTo("3"));
bf.setExtensions(ListUtils.EMPTY_LIST);
bf.setExtensions(Collections.EMPTY_LIST);
assertThat("setExtensions 6", bf.getExtensions(), notNullValue());
assertTrue("setExtensions 7", bf.getExtensions().size() == 0);
bf.setExtensions(backupExtensions);

4
dspace-api/src/test/java/org/dspace/content/BitstreamTest.java
View File

@@ -292,12 +292,12 @@ public class BitstreamTest extends AbstractDSpaceObjectTest {
}
/**
* Test of getSize method, of class Bitstream.
* Test of getSizeBytes method, of class Bitstream.
*/
@Test
public void testGetSize() {
long size = 238413; // yuck, hardcoded!
assertThat("testGetSize 0", bs.getSize(), equalTo(size));
assertThat("testGetSize 0", bs.getSizeBytes(), equalTo(size));
}
/**

2
dspace-api/src/test/java/org/dspace/content/BundleTest.java
View File

@@ -28,7 +28,7 @@ import java.util.List;
import java.util.UUID;
import mockit.NonStrictExpectations;
import org.apache.commons.collections.CollectionUtils;
import org.apache.commons.collections4.CollectionUtils;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.authorize.ResourcePolicy;

4
dspace-api/src/test/java/org/dspace/content/InstallItemTest.java
View File

@@ -225,11 +225,11 @@ public class InstallItemTest extends AbstractUnitTest {
// Create provenance description
String testMessage = "No. of bitstreams: 2\n";
testMessage += "one: "
+ one.getSize() + " bytes, checksum: "
+ one.getSizeBytes() + " bytes, checksum: "
+ one.getChecksum() + " ("
+ one.getChecksumAlgorithm() + ")\n";
testMessage += "two: "
+ two.getSize() + " bytes, checksum: "
+ two.getSizeBytes() + " bytes, checksum: "
+ two.getChecksum() + " ("
+ two.getChecksumAlgorithm() + ")\n";

6
dspace-api/src/test/java/org/dspace/discovery/FullTextContentStreamsTest.java
View File

@@ -72,9 +72,9 @@ public class FullTextContentStreamsTest {
when(textBitstream2.getName()).thenReturn("Full Text 2");
when(textBitstream3.getName()).thenReturn("Full Text 3");
when(textBitstream1.getSize()).thenReturn(1L);
when(textBitstream2.getSize()).thenReturn(2L);
when(textBitstream3.getSize()).thenReturn(3L);
when(textBitstream1.getSizeBytes()).thenReturn(1L);
when(textBitstream2.getSizeBytes()).thenReturn(2L);
when(textBitstream3.getSizeBytes()).thenReturn(3L);
when(bitstreamService.retrieve(null, textBitstream1))
.thenReturn(new ByteArrayInputStream("This is text 1".getBytes(Charsets.UTF_8)));

5
dspace-oai/src/main/java/org/dspace/xoai/app/XOAI.java
View File

@@ -205,8 +205,11 @@ public class XOAI {
while (iterator.hasNext()) {
try {
Item item = iterator.next();
if (item.getHandle() == null) {
log.warn("Skipped item without handle: " + item.getID());
} else {
server.add(this.index(item));
}
//Uncache the item to keep memory consumption low
context.uncacheEntity(item);

2
dspace-oai/src/main/java/org/dspace/xoai/util/ItemUtils.java
View File

@@ -230,7 +230,7 @@ public class ItemUtils {
createValue("format", bit.getFormat(context)
.getMIMEType()));
bitstream.getField().add(
createValue("size", "" + bit.getSize()));
createValue("size", "" + bit.getSizeBytes()));
bitstream.getField().add(createValue("url", url));
bitstream.getField().add(
createValue("checksum", cks));

2
dspace-rest/src/main/java/org/dspace/rest/common/Bitstream.java
View File

@@ -77,7 +77,7 @@ public class Bitstream extends DSpaceObject {
description = bitstream.getDescription();
format = bitstreamService.getFormatDescription(context, bitstream);
sizeBytes = bitstream.getSize();
sizeBytes = bitstream.getSizeBytes();
String path = new DSpace().getRequestService().getCurrentRequest().getHttpServletRequest().getContextPath();
retrieveLink = path + "/bitstreams/" + bitstream.getID() + "/retrieve";
mimeType = bitstreamService.getFormat(context, bitstream).getMIMEType();

4
dspace-rest/src/main/java/org/dspace/rest/filter/ItemFilterUtil.java
View File

@@ -137,7 +137,7 @@ public class ItemFilterUtil {
for (Bitstream bit : bundle.getBitstreams()) {
for (String mime : mimeList) {
if (bit.getFormat(context).getMIMEType().equals(mime.trim())) {
if (bit.getSize() < size) {
if (bit.getSizeBytes() < size) {
count++;
}
}
@@ -162,7 +162,7 @@ public class ItemFilterUtil {
for (Bitstream bit : bundle.getBitstreams()) {
for (String mime : mimeList) {
if (bit.getFormat(context).getMIMEType().equals(mime.trim())) {
if (bit.getSize() > size) {
if (bit.getSizeBytes() > size) {
count++;
}
}

4
dspace-services/pom.xml
View File

@@ -155,8 +155,8 @@
<scope>provided</scope>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
</dependency>
<dependency>
<groupId>commons-configuration</groupId>

9
dspace-spring-rest/src/main/java/org/dspace/app/rest/AuthenticationRestController.java
View File

@@ -76,11 +76,14 @@ public class AuthenticationRestController implements InitializingBean {
Context context = ContextUtil.obtainContext(request);
EPersonRest ePersonRest = null;
if (context.getCurrentUser() != null) {
ePersonRest = ePersonConverter.fromModel(context.getCurrentUser());
ePersonRest = ePersonConverter.fromModelWithGroups(context, context.getCurrentUser());
}
AuthenticationStatusResource authenticationStatusResource = new AuthenticationStatusResource(
new AuthenticationStatusRest(ePersonRest), utils);
halLinkService.addLinks(authenticationStatusResource);
return authenticationStatusResource;
}
@@ -116,6 +119,8 @@ public class AuthenticationRestController implements InitializingBean {
if (context == null || context.getCurrentUser() == null) {
// Note that the actual HTTP status in this case is set by
// org.dspace.app.rest.security.StatelessLoginFilter.unsuccessfulAuthentication()
return ResponseEntity.status(HttpStatus.FORBIDDEN)
.body(failedMessage);
} else {
@@ -123,6 +128,4 @@ public class AuthenticationRestController implements InitializingBean {
return ResponseEntity.ok().build();
}
}
}

2
dspace-spring-rest/src/main/java/org/dspace/app/rest/BitstreamContentRestController.java
View File

@@ -139,7 +139,7 @@ public class BitstreamContentRestController {
if (citationDocumentService.isCitationEnabledForBitstream(bit, context)) {
return generateBitstreamWithCitation(context, bit);
} else {
return Pair.of(bitstreamService.retrieve(context, bit),bit.getSize());
return Pair.of(bitstreamService.retrieve(context, bit),bit.getSizeBytes());
}
}

8
dspace-spring-rest/src/main/java/org/dspace/app/rest/RestResourceController.java
View File

@@ -550,7 +550,8 @@ public class RestResourceController implements InitializingBean {
*/
@RequestMapping(method = RequestMethod.PATCH, value = REGEX_REQUESTMAPPING_IDENTIFIER_AS_UUID)
public ResponseEntity<ResourceSupport> patch(HttpServletRequest request, @PathVariable String apiCategory,
@PathVariable String model, @PathVariable UUID id,
@PathVariable String model,
@PathVariable(name = "uuid") UUID id,
@RequestBody(required = true) JsonNode jsonNode)
throws HttpRequestMethodNotSupportedException {
return patchInternal(request, apiCategory, model, id, jsonNode);
@@ -581,12 +582,9 @@ public class RestResourceController implements InitializingBean {
Patch patch = patchConverter.convert(jsonNode);
modelObject = repository.patch(request, apiCategory, model, id, patch);
} catch (RepositoryMethodNotImplementedException | UnprocessableEntityException |
PatchBadRequestException e) {
PatchBadRequestException | ResourceNotFoundException e) {
log.error(e.getMessage(), e);
throw e;
} catch (Exception e) {
log.error(e.getMessage(), e);
return ControllerUtils.toEmptyResponse(HttpStatus.INTERNAL_SERVER_ERROR);
}
DSpaceResource result = repository.wrapResource(modelObject);
linkService.addLinks(result);

2
dspace-spring-rest/src/main/java/org/dspace/app/rest/converter/BitstreamConverter.java
View File

@@ -60,7 +60,7 @@ public class BitstreamConverter
e.printStackTrace();
}
b.setFormat(format);
b.setSizeBytes(obj.getSize());
b.setSizeBytes(obj.getSizeBytes());
return b;
}

17
dspace-spring-rest/src/main/java/org/dspace/app/rest/converter/EPersonConverter.java
View File

@@ -7,14 +7,17 @@
*/
package org.dspace.app.rest.converter;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.List;
import org.apache.log4j.Logger;
import org.dspace.app.rest.model.EPersonRest;
import org.dspace.app.rest.model.GroupRest;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;
import org.dspace.eperson.Group;
import org.dspace.eperson.service.GroupService;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
@@ -26,9 +29,13 @@ import org.springframework.stereotype.Component;
*/
@Component
public class EPersonConverter extends DSpaceObjectConverter<EPerson, org.dspace.app.rest.model.EPersonRest> {
@Autowired(required = true)
private GroupConverter epersonGroupConverter;
@Autowired(required = true)
private GroupService groupService;
private static final Logger log = Logger.getLogger(EPersonConverter.class);
@Override
@@ -40,10 +47,18 @@ public class EPersonConverter extends DSpaceObjectConverter<EPerson, org.dspace.
eperson.setRequireCertificate(obj.getRequireCertificate());
eperson.setSelfRegistered(obj.getSelfRegistered());
eperson.setEmail(obj.getEmail());
return eperson;
}
public EPersonRest fromModelWithGroups(Context context, EPerson ePerson) throws SQLException {
EPersonRest eperson = fromModel(ePerson);
List<GroupRest> groups = new ArrayList<GroupRest>();
for (Group g : obj.getGroups()) {
for (Group g : groupService.allMemberGroups(context, ePerson)) {
groups.add(epersonGroupConverter.convert(g));
}
eperson.setGroups(groups);
return eperson;
}

28
dspace-spring-rest/src/main/java/org/dspace/app/rest/repository/ItemRestRepository.java
View File

@@ -13,11 +13,16 @@ import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import java.util.UUID;
import javax.servlet.http.HttpServletRequest;
import org.apache.log4j.Logger;
import org.dspace.app.rest.converter.ItemConverter;
import org.dspace.app.rest.exception.PatchBadRequestException;
import org.dspace.app.rest.exception.UnprocessableEntityException;
import org.dspace.app.rest.model.ItemRest;
import org.dspace.app.rest.model.hateoas.ItemResource;
import org.dspace.app.rest.model.patch.Patch;
import org.dspace.app.rest.repository.patch.ItemPatch;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Item;
import org.dspace.content.service.ItemService;
@@ -26,6 +31,7 @@ import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.data.domain.Page;
import org.springframework.data.domain.PageImpl;
import org.springframework.data.domain.Pageable;
import org.springframework.data.rest.webmvc.ResourceNotFoundException;
import org.springframework.stereotype.Component;
/**
@@ -37,12 +43,21 @@ import org.springframework.stereotype.Component;
@Component(ItemRest.CATEGORY + "." + ItemRest.NAME)
public class ItemRestRepository extends DSpaceRestRepository<ItemRest, UUID> {
private static final Logger log = Logger.getLogger(ItemRestRepository.class);
@Autowired
ItemService is;
@Autowired
ItemConverter converter;
/**
* Proposed helper class for Item patches.
*/
@Autowired
ItemPatch itemPatch;
public ItemRestRepository() {
System.out.println("Repository initialized by Spring");
}
@@ -80,6 +95,19 @@ public class ItemRestRepository extends DSpaceRestRepository<ItemRest, UUID> {
return page;
}
@Override
public void patch(Context context, HttpServletRequest request, String apiCategory, String model, UUID uuid, Patch
patch)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException,
ResourceNotFoundException {
ItemRest restModel = findOne(context, uuid);
if (restModel == null) {
throw new ResourceNotFoundException(apiCategory + "." + model + " with id: " + uuid + " not found");
}
itemPatch.patch(restModel, context, patch);
}
@Override
public Class<ItemRest> getDomainClass() {
return ItemRest.class;

25
dspace-spring-rest/src/main/java/org/dspace/app/rest/repository/MetadataFieldRestRepository.java
View File

@@ -10,11 +10,15 @@ package org.dspace.app.rest.repository;
import java.sql.SQLException;
import java.util.List;
import org.dspace.app.rest.Parameter;
import org.dspace.app.rest.SearchRestMethod;
import org.dspace.app.rest.converter.MetadataFieldConverter;
import org.dspace.app.rest.model.MetadataFieldRest;
import org.dspace.app.rest.model.hateoas.MetadataFieldResource;
import org.dspace.content.MetadataField;
import org.dspace.content.MetadataSchema;
import org.dspace.content.service.MetadataFieldService;
import org.dspace.content.service.MetadataSchemaService;
import org.dspace.core.Context;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.data.domain.Page;
@@ -32,6 +36,9 @@ public class MetadataFieldRestRepository extends DSpaceRestRepository<MetadataFi
@Autowired
MetadataFieldService metaFieldService;
@Autowired
MetadataSchemaService metadataSchemaService;
@Autowired
MetadataFieldConverter converter;
@@ -64,6 +71,24 @@ public class MetadataFieldRestRepository extends DSpaceRestRepository<MetadataFi
return page;
}
@SearchRestMethod(name = "bySchema")
public Page<MetadataFieldRest> findBySchema(@Parameter(value = "schema", required = true) String schemaName,
Pageable pageable) {
Context context = obtainContext();
List<MetadataField> metadataFields = null;
try {
MetadataSchema schema = metadataSchemaService.find(context, schemaName);
if (schema == null) {
return null;
}
metadataFields = metaFieldService.findAllInSchema(context, schema);
} catch (SQLException e) {
throw new RuntimeException(e.getMessage(), e);
}
Page<MetadataFieldRest> page = utils.getPage(metadataFields, pageable).map(converter);
return page;
}
@Override
public Class<MetadataFieldRest> getDomainClass() {
return MetadataFieldRest.class;

110
dspace-spring-rest/src/main/java/org/dspace/app/rest/repository/patch/AbstractResourcePatch.java Normal file
View File

@@ -0,0 +1,110 @@
/**
* The contents of this file are subject to the license and copyright
* detailed in the LICENSE and NOTICE files at the root of the source
* tree and available online at
*
* http://www.dspace.org/license/
*/
package org.dspace.app.rest.repository.patch;
import java.sql.SQLException;
import java.util.List;
import org.dspace.app.rest.exception.PatchBadRequestException;
import org.dspace.app.rest.exception.UnprocessableEntityException;
import org.dspace.app.rest.model.RestModel;
import org.dspace.app.rest.model.patch.Operation;
import org.dspace.app.rest.model.patch.Patch;
import org.dspace.authorize.AuthorizeException;
import org.dspace.core.Context;
/**
* The base class for resource PATCH operations.
*
* @author Michael Spalti
*/
public abstract class AbstractResourcePatch<R extends RestModel> {
/**
* Handles the patch operations, delegating actions to sub-class implementations. If no sub-class method
* is provided, the default method throws a UnprocessableEntityException.
*
* @param restModel the REST resource to patch
* @param context
* @param patch
* @throws UnprocessableEntityException
* @throws PatchBadRequestException
* @throws SQLException
* @throws AuthorizeException
*/
public void patch(R restModel, Context context, Patch patch)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
List<Operation> operations = patch.getOperations();
// Note: the list of possible operations is taken from JsonPatchConverter class. Does not implement
// test https://tools.ietf.org/html/rfc6902#section-4.6
ops: for (Operation op : operations) {
switch (op.getOp()) {
case "add":
add(restModel, context, op);
continue ops;
case "replace":
replace(restModel, context, op);
continue ops;
case "remove":
remove(restModel, context, op);
continue ops;
case "copy":
copy(restModel, context, op);
continue ops;
case "move":
move(restModel, context, op);
continue ops;
default:
// JsonPatchConverter should have thrown error before this point.
throw new PatchBadRequestException("Missing or illegal patch operation: " + op.getOp());
}
}
}
// The default patch methods throw an error when no sub-class implementation is provided.
protected void add(R restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
throw new UnprocessableEntityException(
"The add operation is not supported."
);
}
protected void replace(R restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
// The replace operation is functionally identical to a "remove" operation for
// a value, followed immediately by an "add" operation at the same
// location with the replacement value. https://tools.ietf.org/html/rfc6902#section-4.3
remove(restModel, context, operation);
add(restModel, context, operation);
}
protected void remove(R restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
throw new UnprocessableEntityException(
"The remove operation is not supported."
);
}
protected void copy(R restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
throw new UnprocessableEntityException(
"The copy operation is not supported."
);
}
protected void move(R restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
throw new UnprocessableEntityException(
"The move operation is not supported."
);
}
}

143
dspace-spring-rest/src/main/java/org/dspace/app/rest/repository/patch/ItemPatch.java Normal file
View File

@@ -0,0 +1,143 @@
/**
* The contents of this file are subject to the license and copyright
* detailed in the LICENSE and NOTICE files at the root of the source
* tree and available online at
*
* http://www.dspace.org/license/
*/
package org.dspace.app.rest.repository.patch;
import java.sql.SQLException;
import java.util.UUID;
import org.apache.log4j.Logger;
import org.dspace.app.rest.exception.PatchBadRequestException;
import org.dspace.app.rest.exception.UnprocessableEntityException;
import org.dspace.app.rest.model.ItemRest;
import org.dspace.app.rest.model.patch.Operation;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.Item;
import org.dspace.content.service.ItemService;
import org.dspace.core.Context;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
/**
* This is the implementation for Item resource patches.
*
* @author Michael Spalti
*/
@Component
public class ItemPatch extends AbstractResourcePatch<ItemRest> {
private static final String OPERATION_PATH_WITHDRAW = "/withdrawn";
private static final String OPERATION_PATH_DISCOVERABLE = "/discoverable";
private static final Logger log = Logger.getLogger(ItemPatch.class);
@Autowired
ItemService is;
/**
* Implementation of the PATCH replace operation.
*
* @param restModel
* @param context
* @param operation
* @throws UnprocessableEntityException
* @throws PatchBadRequestException
* @throws SQLException
* @throws AuthorizeException
*/
@Override
protected void replace(ItemRest restModel, Context context, Operation operation)
throws UnprocessableEntityException, PatchBadRequestException, SQLException, AuthorizeException {
switch (operation.getPath()) {
case OPERATION_PATH_WITHDRAW:
withdraw(restModel, context, (Boolean) operation.getValue());
break;
case OPERATION_PATH_DISCOVERABLE:
discoverable(restModel, context, (Boolean) operation.getValue());
break;
default:
throw new UnprocessableEntityException(
"Unrecognized patch operation path: " + operation.getPath()
);
}
}
/**
* Withdraws or reinstates the item based on boolean value provided in the patch request.
*
* @param restModel
* @param context
* @param withdrawItem
* @throws PatchBadRequestException
* @throws SQLException
* @throws AuthorizeException
*/
private void withdraw(ItemRest restModel, Context context, Boolean withdrawItem)
throws PatchBadRequestException, SQLException, AuthorizeException {
try {
if (withdrawItem == null) {
throw new PatchBadRequestException("Boolean value not provided for withdrawal operation.");
}
if (withdrawItem) {
// Item is not withdrawn but is also NOT archived. Is this a possible situation?
if (!restModel.getWithdrawn() && !restModel.getInArchive()) {
throw new UnprocessableEntityException("Cannot withdraw item because it is not archived.");
}
// Item is already withdrawn. No-op, 200 response.
// (The operation is not idempotent since it results in a provenance note in the record.)
if (restModel.getWithdrawn()) {
return;
}
Item item = is.find(context, UUID.fromString(restModel.getUuid()));
is.withdraw(context, item);
} else {
// No need to reinstate item if it has not previously been not withdrawn.
// No-op, 200 response. (The operation is not idempotent since it results
// in a provenance note in the record.)
if (!restModel.getWithdrawn()) {
return;
}
Item item = is.find(context, UUID.fromString(restModel.getUuid()));
is.reinstate(context, item);
}
} catch (SQLException | AuthorizeException e) {
log.error(e.getMessage(), e);
throw e;
}
}
/**
* Sets discoverable field on the item.
*
* @param restModel
* @param context
* @param isDiscoverable
* @throws SQLException
* @throws AuthorizeException
*/
private void discoverable(ItemRest restModel, Context context, Boolean isDiscoverable)
throws SQLException, AuthorizeException {
if (isDiscoverable == null) {
throw new PatchBadRequestException("Boolean value not provided for discoverable operation.");
}
try {
Item item = is.find(context, UUID.fromString(restModel.getUuid()));
item.setDiscoverable(isDiscoverable);
is.update(context, item);
} catch (SQLException | AuthorizeException e) {
log.error(e.getMessage(), e);
throw e;
}
}
}

2
dspace-spring-rest/src/main/java/org/dspace/app/rest/security/RestAuthenticationService.java
View File

@@ -11,6 +11,7 @@ import java.io.IOException;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.dspace.authenticate.service.AuthenticationService;
import org.dspace.core.Context;
import org.dspace.eperson.EPerson;
import org.springframework.stereotype.Service;
@@ -33,4 +34,5 @@ public interface RestAuthenticationService {
void invalidateAuthenticationData(HttpServletRequest request, Context context) throws Exception;
AuthenticationService getAuthenticationService();
}

52
dspace-spring-rest/src/main/java/org/dspace/app/rest/security/StatelessLoginFilter.java
View File

@@ -10,7 +10,6 @@ package org.dspace.app.rest.security;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Iterator;
import javax.servlet.FilterChain;
import javax.servlet.ServletException;
import javax.servlet.http.HttpServletRequest;
@@ -19,11 +18,9 @@ import javax.servlet.http.HttpServletResponse;
import org.apache.commons.lang3.StringUtils;
import org.dspace.app.rest.utils.ContextUtil;
import org.dspace.authenticate.AuthenticationMethod;
import org.dspace.authenticate.factory.AuthenticateServiceFactory;
import org.dspace.authenticate.service.AuthenticationService;
import org.dspace.core.Context;
import org.springframework.security.authentication.AuthenticationManager;
import org.springframework.security.authentication.BadCredentialsException;
import org.springframework.security.core.Authentication;
import org.springframework.security.core.AuthenticationException;
import org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter;
@@ -59,25 +56,9 @@ public class StatelessLoginFilter extends AbstractAuthenticationProcessingFilter
String user = req.getParameter("user");
String password = req.getParameter("password");
try {
return authenticationManager.authenticate(
new DSpaceAuthentication(user, password, new ArrayList<>())
);
} catch (BadCredentialsException e) {
AuthenticationService authenticationService =
AuthenticateServiceFactory.getInstance().getAuthenticationService();
Iterator<AuthenticationMethod> authenticationMethodIterator =
authenticationService.authenticationMethodIterator();
while (authenticationMethodIterator.hasNext()) {
AuthenticationMethod authenticationMethod = authenticationMethodIterator.next();
Context context = ContextUtil.obtainContext(req);
String loginPageURL = authenticationMethod.loginPageURL(context, req, res);
if (StringUtils.isNotBlank(loginPageURL)) {
res.addHeader("Location", loginPageURL);
}
}
throw e;
}
}
@@ -90,4 +71,37 @@ public class StatelessLoginFilter extends AbstractAuthenticationProcessingFilter
DSpaceAuthentication dSpaceAuthentication = (DSpaceAuthentication) auth;
restAuthenticationService.addAuthenticationDataForUser(req, res, dSpaceAuthentication);
}
@Override
protected void unsuccessfulAuthentication(HttpServletRequest request,
HttpServletResponse response, AuthenticationException failed)
throws IOException, ServletException {
AuthenticationService authenticationService = restAuthenticationService.getAuthenticationService();
Iterator<AuthenticationMethod> authenticationMethodIterator
= authenticationService.authenticationMethodIterator();
Context context = ContextUtil.obtainContext(request);
StringBuilder wwwAuthenticate = new StringBuilder();
while (authenticationMethodIterator.hasNext()) {
AuthenticationMethod authenticationMethod = authenticationMethodIterator.next();
if (wwwAuthenticate.length() > 0) {
wwwAuthenticate.append(", ");
}
wwwAuthenticate.append(authenticationMethod.getName()).append(" realm=\"DSpace REST API\"");
String loginPageURL = authenticationMethod.loginPageURL(context, request, response);
if (StringUtils.isNotBlank(loginPageURL)) {
// We cannot reply with a 303 code because may browsers handle 3xx response codes transparently. This
// means that the JavaScript client code is not aware of the 303 status and fails to react accordingly.
wwwAuthenticate.append(", location=\"").append(loginPageURL).append("\"");
}
}
response.setHeader("WWW-Authenticate", wwwAuthenticate.toString());
response.sendError(HttpServletResponse.SC_UNAUTHORIZED, failed.getMessage());
}
}

5
dspace-spring-rest/src/main/java/org/dspace/app/rest/security/jwt/JWTTokenRestAuthenticationServiceImpl.java
View File

@@ -106,6 +106,11 @@ public class JWTTokenRestAuthenticationServiceImpl implements RestAuthentication
jwtTokenHandler.invalidateToken(token, request, context);
}
@Override
public AuthenticationService getAuthenticationService() {
return authenticationService;
}
private void addTokenToResponse(final HttpServletResponse response, final String token) throws IOException {
response.setHeader(AUTHORIZATION_HEADER, String.format("%s %s", AUTHORIZATION_TYPE, token));
}

2
dspace-spring-rest/src/main/java/org/dspace/app/rest/submit/SubmissionService.java
View File

@@ -138,7 +138,7 @@ public class SubmissionService {
checksum.setCheckSumAlgorithm(source.getChecksumAlgorithm());
checksum.setValue(source.getChecksum());
data.setCheckSum(checksum);
data.setSizeBytes(source.getSize());
data.setSizeBytes(source.getSizeBytes());
data.setUrl(configurationService.getProperty("dspace.url") + "/api/" + BitstreamRest.CATEGORY + "/" + English
.plural(BitstreamRest.NAME) + "/" + source.getID() + "/content");
return data;

22
dspace-spring-rest/src/main/java/org/dspace/app/rest/utils/RestRepositoryUtils.java
View File

@@ -124,12 +124,12 @@ public class RestRepositoryUtils {
MultiValueMap<String, Object> result = new LinkedMultiValueMap<String, Object>(parameters);
MethodParameters methodParameters = new MethodParameters(method, PARAM_ANNOTATION);
for (MethodParameter parameter : methodParameters.getParametersWith(Parameter.class)) {
for (MethodParameter parameter : methodParameters.getParameters()) {
final Parameter parameterAnnotation = parameter.getParameterAnnotation(Parameter.class);
final String paramName = parameter.getParameterName();
String paramName = getParamName(parameter, parameterAnnotation);
List<Object> value = parameters.get(paramName);
if (value == null) {
if (parameterAnnotation.required()) {
if (parameterAnnotation != null && parameterAnnotation.required()) {
throw new MissingParameterException(
String.format("Required Parameter[%s] Missing",
parameter.getParameterName()));
@@ -188,8 +188,8 @@ public class RestRepositoryUtils {
} else if (Sort.class.isAssignableFrom(targetType)) {
result[i] = sortToUse;
} else {
String parameterName = param.getParameterName();
final Parameter parameterAnnotation = param.getParameterAnnotation(Parameter.class);
String parameterName = getParamName(param, parameterAnnotation);
if (StringUtils.isBlank(parameterName)) {
throw new IllegalArgumentException(
@@ -205,6 +205,18 @@ public class RestRepositoryUtils {
return result;
}
private String getParamName(MethodParameter parameter, final Parameter parameterAnnotation) {
String paramName = null;
if (parameterAnnotation != null) {
paramName = parameterAnnotation.value();
}
if (paramName == null) {
paramName = parameter.getParameterName();
}
return paramName;
}
/**
* Unwraps the first item if the given source has exactly one element. Taken
* from

40
dspace-spring-rest/src/main/webapp/login.html
View File

@@ -44,6 +44,10 @@
margin-bottom: 15px;
padding: 7px 9px;
}
.alternative-login {
margin-bottom: 10px;
}
</style>
<script src="browser/vendor/js/jquery-1.10.2.min.js"></script>
<script src="browser/vendor/js/bootstrap.js"></script>
@@ -56,6 +60,10 @@
<input type="text" class="input-block-level" placeholder="Username" id="username">
<input type="password" class="input-block-level" placeholder="Password" id="password">
<button type="button" class="btn btn-large btn-primary" id="login">Sign in</button>
<div class="other-login-methods hidden">
<h3>Other login methods:</h3>
</div>
</form>
</div>
@@ -91,15 +99,39 @@
type : 'POST',
success : successHandler,
error : function(result, status, xhr) {
if (xhr == 401) {
var loc = result.getResponseHeader("location");
if (loc != null && loc != "") {
document.location = loc;
if (result.status === 401) {
var authenticate = result.getResponseHeader("WWW-Authenticate");
var element = $('div.other-login-methods');
if(authenticate !== null) {
var realms = authenticate.match(/(\w+ (\w+=((".*?")|[^,]*)(, )?)*)/g);
if (realms.length == 1){
var loc = /location="([^,]*)"/.exec(authenticate);
if (loc !== null && loc.length === 2) {
document.location = loc[1];
}
} else if (realms.length > 1){
for (var i = 0; i < realms.length; i++){
addLocationButton(realms[i], element);
}
}
}
}
}
});
function addLocationButton(realm, element){
element.removeClass("hidden");
var loc = /location="([^,]*)"/.exec(realm);
var name = /(\w+) (\w+=((".*?")|[^,]*)(, )?)*/.exec(realm);
if (loc !== null && loc.length === 2) {
element.append('<a href="' + loc[1] + '" class="btn btn-large btn-primary alternative-login">' + capitalizeFirstLetter(name[1]) + '</a>');
}
}
function capitalizeFirstLetter(string) {
return string.charAt(0).toUpperCase() + string.slice(1);
}
$("#login").click(function() {
$.ajax({

109
dspace-spring-rest/src/test/java/org/dspace/app/rest/AuthenticationRestControllerIT.java
View File

@@ -8,6 +8,8 @@
package org.dspace.app.rest;
import static java.lang.Thread.sleep;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.endsWith;
import static org.hamcrest.Matchers.is;
@@ -23,12 +25,14 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.
import java.util.Base64;
import org.dspace.app.rest.builder.GroupBuilder;
import org.dspace.app.rest.matcher.GroupMatcher;
import org.dspace.app.rest.test.AbstractControllerIntegrationTest;
import org.dspace.eperson.Group;
import org.dspace.services.ConfigurationService;
import org.junit.Before;
import org.junit.Test;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.test.web.servlet.result.MockMvcResultHandlers;
/**
* Integration test that covers various authentication scenarios
@@ -43,6 +47,9 @@ public class AuthenticationRestControllerIT extends AbstractControllerIntegratio
public static final String[] PASS_ONLY = {"org.dspace.authenticate.PasswordAuthentication"};
public static final String[] SHIB_ONLY = {"org.dspace.authenticate.ShibAuthentication"};
public static final String[] SHIB_AND_IP =
{"org.dspace.authenticate.IPAuthentication",
"org.dspace.authenticate.ShibAuthentication"};
@Before
public void setup() throws Exception {
@@ -65,7 +72,9 @@ public class AuthenticationRestControllerIT extends AbstractControllerIntegratio
.andExpect(jsonPath("$.type", is("status")))
.andExpect(jsonPath("$._links.eperson.href", startsWith(REST_SERVER_URL)))
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())));
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())))
.andExpect(jsonPath("$._embedded.eperson.groups", contains(
GroupMatcher.matchGroupWithName("Anonymous"))));
}
@Test
@@ -238,14 +247,27 @@ public class AuthenticationRestControllerIT extends AbstractControllerIntegratio
public void testReuseTokenWithDifferentIP() throws Exception {
String token = getAuthToken(eperson.getEmail(), password);
getClient(token).perform(get("/api/authn/status"))
.andExpect(status().isOk())
.andExpect(jsonPath("$.okay", is(true)))
.andExpect(jsonPath("$.authenticated", is(true)))
.andExpect(jsonPath("$.type", is("status")));
getClient(token).perform(get("/api/authn/status")
.header("X-FORWARDED-FOR", "1.1.1.1"))
.andExpect(status().isOk())
.andExpect(jsonPath("$.okay", is(true)))
.andExpect(jsonPath("$.authenticated", is(false)))
.andExpect(jsonPath("$.type", is("status")));
getClient(token).perform(get("/api/authn/status")
.with(ip("1.1.1.1")))
.andExpect(status().isOk())
.andExpect(jsonPath("$.okay", is(true)))
.andExpect(jsonPath("$.authenticated", is(false)))
.andExpect(jsonPath("$.type", is("status")));
}
@Test
@@ -321,18 +343,31 @@ public class AuthenticationRestControllerIT extends AbstractControllerIntegratio
}
@Test
public void testShibbolethLoginRequest() throws Exception {
public void testShibbolethLoginRequestAttribute() throws Exception {
context.turnOffAuthorisationSystem();
//Enable Shibboleth login
configurationService.setProperty("plugin.sequence.org.dspace.authenticate.AuthenticationMethod", SHIB_ONLY);
//Create a reviewers group
Group reviewersGroup = GroupBuilder.createGroup(context)
.withName("Reviewers")
.build();
//Faculty members are assigned to the Reviewers group
configurationService.setProperty("authentication-shibboleth.role.faculty", "Reviewers");
context.restoreAuthSystemState();
getClient().perform(post("/api/authn/login").header("Referer", "http://my.uni.edu"))
.andExpect(status().isUnauthorized())
.andExpect(header().string("Location", "/Shibboleth.sso/Login?target=http%3A%2F%2Fmy.uni.edu"))
.andReturn().getResponse().getHeader("Location");
.andExpect(header().string("WWW-Authenticate",
"shibboleth realm=\"DSpace REST API\", " +
"location=\"/Shibboleth.sso/Login?target=http%3A%2F%2Fmy.uni.edu\""));
//Simulate that a shibboleth authentication has happened
String token = getClient().perform(post("/api/authn/login")
.requestAttr("SHIB-MAIL", eperson.getEmail()))
.requestAttr("SHIB-MAIL", eperson.getEmail())
.requestAttr("SHIB-SCOPED-AFFILIATION", "faculty;staff"))
.andExpect(status().isOk())
.andReturn().getResponse().getHeader(AUTHORIZATION_HEADER);
@@ -344,7 +379,67 @@ public class AuthenticationRestControllerIT extends AbstractControllerIntegratio
.andExpect(jsonPath("$.authenticated", is(true)))
.andExpect(jsonPath("$.type", is("status")))
.andExpect(jsonPath("$._links.eperson.href", startsWith(REST_SERVER_URL)))
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())));
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())))
.andExpect(jsonPath("$._embedded.eperson.groups", containsInAnyOrder(
GroupMatcher.matchGroupWithName("Anonymous"), GroupMatcher.matchGroupWithName("Reviewers"))));
}
@Test
public void testShibbolethLoginRequestHeaderWithIpAuthentication() throws Exception {
configurationService.setProperty("plugin.sequence.org.dspace.authenticate.AuthenticationMethod", SHIB_AND_IP);
configurationService.setProperty("authentication-ip.Administrator", "123.123.123.123");
getClient().perform(post("/api/authn/login")
.header("Referer", "http://my.uni.edu")
.with(ip("123.123.123.123")))
.andExpect(status().isUnauthorized())
.andExpect(header().string("WWW-Authenticate",
"ip realm=\"DSpace REST API\", shibboleth realm=\"DSpace REST API\", " +
"location=\"/Shibboleth.sso/Login?target=http%3A%2F%2Fmy.uni.edu\""));
//Simulate that a shibboleth authentication has happened
String token = getClient().perform(post("/api/authn/login")
.with(ip("123.123.123.123"))
.header("SHIB-MAIL", eperson.getEmail()))
.andExpect(status().isOk())
.andReturn().getResponse().getHeader(AUTHORIZATION_HEADER);
getClient(token).perform(get("/api/authn/status")
.with(ip("123.123.123.123")))
.andDo(MockMvcResultHandlers.print())
.andExpect(status().isOk())
//We expect the content type to be "application/hal+json;charset=UTF-8"
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$.okay", is(true)))
.andExpect(jsonPath("$.authenticated", is(true)))
.andExpect(jsonPath("$.type", is("status")))
.andExpect(jsonPath("$._links.eperson.href", startsWith(REST_SERVER_URL)))
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())))
.andExpect(jsonPath("$._embedded.eperson.groups", containsInAnyOrder(
GroupMatcher.matchGroupWithName("Administrator"),
GroupMatcher.matchGroupWithName("Anonymous"))));
//Simulate that a new shibboleth authentication has happened from another IP
token = getClient().perform(post("/api/authn/login")
.with(ip("234.234.234.234"))
.header("SHIB-MAIL", eperson.getEmail()))
.andExpect(status().isOk())
.andReturn().getResponse().getHeader(AUTHORIZATION_HEADER);
getClient(token).perform(get("/api/authn/status")
.with(ip("234.234.234.234")))
.andDo(MockMvcResultHandlers.print())
.andExpect(status().isOk())
//We expect the content type to be "application/hal+json;charset=UTF-8"
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$.okay", is(true)))
.andExpect(jsonPath("$.authenticated", is(true)))
.andExpect(jsonPath("$.type", is("status")))
.andExpect(jsonPath("$._links.eperson.href", startsWith(REST_SERVER_URL)))
.andExpect(jsonPath("$._embedded.eperson.email", is(eperson.getEmail())))
.andExpect(jsonPath("$._embedded.eperson.groups", contains(
GroupMatcher.matchGroupWithName("Anonymous"))));
}
}

725
dspace-spring-rest/src/test/java/org/dspace/app/rest/ItemRestRepositoryIT.java
View File

@@ -10,12 +10,16 @@ package org.dspace.app.rest;
import static org.hamcrest.Matchers.is;
import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.delete;
import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get;
import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.patch;
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.content;
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.jsonPath;
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.List;
import java.util.UUID;
import javax.ws.rs.core.MediaType;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.CharEncoding;
@@ -25,6 +29,8 @@ import org.dspace.app.rest.builder.CommunityBuilder;
import org.dspace.app.rest.builder.ItemBuilder;
import org.dspace.app.rest.builder.WorkspaceItemBuilder;
import org.dspace.app.rest.matcher.ItemMatcher;
import org.dspace.app.rest.model.patch.Operation;
import org.dspace.app.rest.model.patch.ReplaceOperation;
import org.dspace.app.rest.test.AbstractControllerIntegrationTest;
import org.dspace.content.Bitstream;
import org.dspace.content.Collection;
@@ -307,7 +313,724 @@ public class ItemRestRepositoryIT extends AbstractControllerIntegrationTest {
Collection col2 = CollectionBuilder.createCollection(context, child1).withName("Collection 2").build();
getClient().perform(get("/api/core/items/" + UUID.randomUUID()))
.andExpect(status().isNotFound());
.andExpect(status().isNotFound())
;
}
@Test
public void withdrawPatchTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
// A token must be provided for withdraw operation. The person
// is used in the provenance note.
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// withdraw item
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
// check item status after the patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
// item already withdrawn, no-op, 200 response
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
}
@Test
public void withdrawPatchUnauthorizedTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// withdraw item
getClient().perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isUnauthorized());
// use the admin to be sure to get the item status
String tokenAdmin = getAuthToken(eperson.getEmail(), password);
// check item status after the failed patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
}
@Test
public void withdrawPatchForbiddenTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
// try to use an unauthorized user
String token = getAuthToken(eperson.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// withdraw item
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isForbidden());
// use the admin to be sure to get the item status
String tokenAdmin = getAuthToken(eperson.getEmail(), password);
// check item status after the failed patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
}
@Test
public void valueMissingForWithdrawalOperation() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
// we need to set a current user as the withdrawn operation use it to add provenance information
context.setCurrentUser(admin);
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
//2. One withdrawn item
Item item2 = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.withdrawn()
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", null);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isBadRequest());
// check item status after the failed patch (it must be unchanged)
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isBadRequest());
// check item status after the failed patch (it must be unchanged)
getClient(token).perform(get("/api/core/items/" + item2.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item2.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
}
@Test
public void reinstatePatchTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
// we need to set a current user as the withdrawn operation use it to add provenance information
context.setCurrentUser(admin);
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.withdrawn()
.build();
// A token must be provided for reinstate operation. The person
// is used in the provenance note.
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
// check item status after the patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
// reinstate an already installed item is a no-op
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(false)))
.andExpect(jsonPath("$.inArchive", Matchers.is(true)));
}
@Test
public void reinstatePatchUnauthorizedTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
// we need to set a current user as the withdrawn operation use it to add provenance information
context.setCurrentUser(admin);
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.withdrawn()
.build();
String tokenAdmin = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make an anonymous request
getClient().perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isUnauthorized());
// check item status after the failed patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
}
@Test
public void reinstatePatchForbiddenTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
// we need to set a current user as the withdrawn operation use it to add provenance information
context.setCurrentUser(admin);
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.withdrawn()
.build();
String token = getAuthToken(eperson.getEmail(), password);
String tokenAdmin = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/withdrawn", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make a request with an unauthorized user
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isForbidden());
// check item status after the failed patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.withdrawn", Matchers.is(true)))
.andExpect(jsonPath("$.inArchive", Matchers.is(false)));
}
@Test
public void makeDiscoverablePatchTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One private item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.makePrivate()
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make discoverable
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
// check item status after the patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
// make discoverable an already discoverable item is a no-op
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
}
@Test
public void makeDiscoverablePatchUnauthorizedTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One private item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.makePrivate()
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make discoverable with anonymous user
getClient().perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isUnauthorized());
// check item status after the patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(false)));
}
@Test
public void makeDiscoverablePatchForbiddenTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One private item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.makePrivate()
.build();
String token = getAuthToken(eperson.getEmail(), password);
String tokenAdmin = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", true);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make discoverable with anonymous user
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isForbidden());
// check item status after the patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(false)));
}
@Test
public void makePrivatePatchTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make private
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(false)));
// check item status after the patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(false)));
}
@Test
public void makePrivatePatchUnauthorizedTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make private with an anonymous user
getClient().perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isUnauthorized());
// check item status after the failed patch
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
}
public void makePrivatePatchForbiddenTest() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1).withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
String token = getAuthToken(eperson.getEmail(), password);
String tokenAdmin = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", false);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
// make private
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isForbidden());
// check item status after the failed patch
getClient(tokenAdmin).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
}
@Test
public void valueMissingForDiscoverableOperation() throws Exception {
context.turnOffAuthorisationSystem();
//** GIVEN **
//1. A community-collection structure with one parent community with sub-community and one collection.
parentCommunity = CommunityBuilder.createCommunity(context)
.withName("Parent Community")
.build();
Community child1 = CommunityBuilder.createSubCommunity(context, parentCommunity)
.withName("Sub Community")
.build();
Collection col1 = CollectionBuilder.createCollection(context, child1)
.withName("Collection 1").build();
//2. One public item
Item item = ItemBuilder.createItem(context, col1)
.withTitle("Public item 1")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.build();
//3. One private item
Item item2 = ItemBuilder.createItem(context, col1)
.withTitle("Not discoverable item 2")
.withIssueDate("2017-10-17")
.withAuthor("Smith, Donald").withAuthor("Doe, John")
.withSubject("ExtraEntry")
.makePrivate()
.build();
String token = getAuthToken(admin.getEmail(), password);
List<Operation> ops = new ArrayList<Operation>();
ReplaceOperation replaceOperation = new ReplaceOperation("/discoverable", null);
ops.add(replaceOperation);
String patchBody = getPatchContent(ops);
getClient(token).perform(patch("/api/core/items/" + item.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isBadRequest());
// check item status after the failed patch (it must be unchanged)
getClient(token).perform(get("/api/core/items/" + item.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(true)));
List<Operation> ops2 = new ArrayList();
ReplaceOperation replaceOperation2 = new ReplaceOperation("/discoverable", null);
ops.add(replaceOperation);
String patchBody2 = getPatchContent(ops);
getClient(token).perform(patch("/api/core/items/" + item2.getID())
.content(patchBody)
.contentType(MediaType.APPLICATION_JSON_PATCH_JSON))
.andExpect(status().isBadRequest());
// check item status after the failed patch (it must be unchanged)
getClient(token).perform(get("/api/core/items/" + item2.getID()))
.andExpect(status().isOk())
.andExpect(jsonPath("$.uuid", Matchers.is(item2.getID().toString())))
.andExpect(jsonPath("$.discoverable", Matchers.is(false)));
}
@Test

5
dspace-spring-rest/src/test/java/org/dspace/app/rest/MetadataschemaRestRepositoryIT.java → dspace-spring-rest/src/test/java/org/dspace/app/rest/MetadataSchemaRestRepositoryIT.java
View File

@@ -18,10 +18,9 @@ import org.dspace.app.rest.matcher.MetadataschemaMatcher;
import org.dspace.app.rest.test.AbstractControllerIntegrationTest;
import org.dspace.content.MetadataSchema;
import org.hamcrest.Matchers;
import org.junit.Ignore;
import org.junit.Test;
public class MetadataschemaRestRepositoryIT extends AbstractControllerIntegrationTest {
public class MetadataSchemaRestRepositoryIT extends AbstractControllerIntegrationTest {
@Test
public void findAll() throws Exception {
@@ -41,9 +40,7 @@ public class MetadataschemaRestRepositoryIT extends AbstractControllerIntegratio
}
//TODO This test fails, reactivate when endpoint is fixed
@Test
@Ignore
public void findOne() throws Exception {
context.turnOffAuthorisationSystem();

82
dspace-spring-rest/src/test/java/org/dspace/app/rest/MetadatafieldRestRepositoryIT.java
View File

@@ -14,11 +14,12 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.
import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status;
import org.dspace.app.rest.builder.MetadataFieldBuilder;
import org.dspace.app.rest.builder.MetadataSchemaBuilder;
import org.dspace.app.rest.matcher.MetadataFieldMatcher;
import org.dspace.app.rest.test.AbstractControllerIntegrationTest;
import org.dspace.content.MetadataField;
import org.dspace.content.MetadataSchema;
import org.hamcrest.Matchers;
import org.junit.Ignore;
import org.junit.Test;
public class MetadatafieldRestRepositoryIT extends AbstractControllerIntegrationTest {
@@ -31,22 +32,23 @@ public class MetadatafieldRestRepositoryIT extends AbstractControllerIntegration
MetadataField metadataField = MetadataFieldBuilder
.createMetadataField(context, "AnElement", "AQualifier", "AScopeNote").build();
getClient().perform(get("/api/core/metadatafields"))
getClient().perform(get("/api/core/metadatafields")
.param("size", String.valueOf(100)))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$._embedded.metadatafields", Matchers.hasItem(
MetadataFieldMatcher.matchMetadataField()
)))
.andExpect(jsonPath("$._embedded.metadatafields", Matchers.hasItems(
MetadataFieldMatcher.matchMetadataFieldByKeys("dc","title", null),
MetadataFieldMatcher.matchMetadataFieldByKeys("dc","date", "issued"))
))
.andExpect(jsonPath("$._links.first.href", Matchers.containsString("/api/core/metadatafields")))
.andExpect(jsonPath("$._links.self.href", Matchers.containsString("/api/core/metadatafields")))
.andExpect(jsonPath("$._links.next.href", Matchers.containsString("/api/core/metadatafields")))
.andExpect(jsonPath("$._links.last.href", Matchers.containsString("/api/core/metadatafields")))
.andExpect(jsonPath("$.page.size", is(20)));
.andExpect(jsonPath("$.page.size", is(100)));
}
@Test
@Ignore
public void findOne() throws Exception {
context.turnOffAuthorisationSystem();
@@ -56,10 +58,70 @@ public class MetadatafieldRestRepositoryIT extends AbstractControllerIntegration
getClient().perform(get("/api/core/metadatafields/" + metadataField.getID()))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$._embedded.metadatafields", Matchers.hasItem(
.andExpect(jsonPath("$", Matchers.is(
MetadataFieldMatcher.matchMetadataField(metadataField)
)))
)));
}
.andExpect(jsonPath("$.page.size", is(20)));
@Test
public void searchMethodsExist() throws Exception {
getClient().perform(get("/api/core/metadatafields"))
.andExpect(jsonPath("$._links.search.href", Matchers.notNullValue()));
getClient().perform(get("/api/core/metadatafields/search"))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$._links.bySchema", Matchers.notNullValue()));
}
@Test
public void findBySchema() throws Exception {
context.turnOffAuthorisationSystem();
MetadataSchema schema = MetadataSchemaBuilder.createMetadataSchema(context, "ASchema",
"http://www.dspace.org/ns/aschema").build();
MetadataField metadataField = MetadataFieldBuilder
.createMetadataField(context, schema, "AnElement", "AQualifier", "AScopeNote").build();
getClient().perform(get("/api/core/metadatafields/search/bySchema")
.param("schema", "dc")
.param("size", String.valueOf(100)))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$._embedded.metadatafields", Matchers.hasItems(
MetadataFieldMatcher.matchMetadataFieldByKeys("dc","title", null),
MetadataFieldMatcher.matchMetadataFieldByKeys("dc","date", "issued"))
))
.andExpect(jsonPath("$.page.size", is(100)));
getClient().perform(get("/api/core/metadatafields/search/bySchema")
.param("schema", schema.getName()))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$._embedded.metadatafields", Matchers.hasItem(
MetadataFieldMatcher.matchMetadataField(metadataField))
))
.andExpect(jsonPath("$.page.size", is(20)))
.andExpect(jsonPath("$.page.totalElements", is(1)));
}
@Test
public void findByUndefinedSchema() throws Exception {
getClient().perform(get("/api/core/metadatafields/search/bySchema")
.param("schema", "undefined"))
.andExpect(status().isOk())
.andExpect(content().contentType(contentType))
.andExpect(jsonPath("$.page.size", is(20)))
.andExpect(jsonPath("$.page.totalElements", is(0)));
}
@Test
public void findByNullSchema() throws Exception {
getClient().perform(get("/api/core/metadatafields/search/bySchema"))
.andExpect(status().isUnprocessableEntity());
}
}

11
dspace-spring-rest/src/test/java/org/dspace/app/rest/builder/AbstractBuilder.java
View File

@@ -7,6 +7,7 @@
*/
package org.dspace.app.rest.builder;
import java.util.Comparator;
import java.util.LinkedList;
import java.util.List;
@@ -142,6 +143,12 @@ public abstract class AbstractBuilder<T, S> {
}
public static void cleanupObjects() throws Exception {
builders.sort(new Comparator<AbstractBuilder>() {
@Override
public int compare(AbstractBuilder o1, AbstractBuilder o2) {
return o1.getPriority() - o2.getPriority();
}
});
for (AbstractBuilder builder : builders) {
builder.cleanup();
}
@@ -161,6 +168,10 @@ public abstract class AbstractBuilder<T, S> {
}
}
protected int getPriority() {
return 0;
}
protected abstract void cleanup() throws Exception;
public abstract T build();

2
dspace-spring-rest/src/test/java/org/dspace/app/rest/builder/CollectionBuilder.java
View File

@@ -71,8 +71,8 @@ public class CollectionBuilder extends AbstractDSpaceObjectBuilder<Collection> {
try {
collectionService.update(context, collection);
context.dispatchEvents();
indexingService.commit();
} catch (Exception e) {
return handleException(e);
}

16
dspace-spring-rest/src/test/java/org/dspace/app/rest/builder/ItemBuilder.java
View File

@@ -24,6 +24,7 @@ import org.dspace.eperson.Group;
*/
public class ItemBuilder extends AbstractDSpaceObjectBuilder<Item> {
private boolean withdrawn = false;
private WorkspaceItem workspaceItem;
private Item item;
private Group readerGroup = null;
@@ -71,6 +72,17 @@ public class ItemBuilder extends AbstractDSpaceObjectBuilder<Item> {
return this;
}
/**
* Withdrawn the item under build. Please note that an user need to be loggedin the context to avoid NPE during the
* creation of the provenance metadata
*
* @return the ItemBuilder
*/
public ItemBuilder withdrawn() {
withdrawn = true;
return this;
}
public ItemBuilder withEmbargoPeriod(String embargoPeriod) {
return setEmbargo(embargoPeriod, item);
}
@@ -91,6 +103,10 @@ public class ItemBuilder extends AbstractDSpaceObjectBuilder<Item> {
setOnlyReadPermission(workspaceItem.getItem(), readerGroup, null);
}
if (withdrawn) {
itemService.withdraw(context, item);
}
context.dispatchEvents();
indexingService.commit();

22
dspace-spring-rest/src/test/java/org/dspace/app/rest/builder/MetadataFieldBuilder.java
View File

@@ -13,6 +13,7 @@ import java.sql.SQLException;
import org.apache.log4j.Logger;
import org.dspace.authorize.AuthorizeException;
import org.dspace.content.MetadataField;
import org.dspace.content.MetadataSchema;
import org.dspace.content.NonUniqueMetadataException;
import org.dspace.content.service.MetadataFieldService;
import org.dspace.core.Context;
@@ -25,6 +26,11 @@ public class MetadataFieldBuilder extends AbstractBuilder<MetadataField, Metadat
private MetadataField metadataField;
@Override
protected int getPriority() {
return Integer.MAX_VALUE - 1;
}
protected MetadataFieldBuilder(Context context) {
super(context);
}
@@ -82,13 +88,27 @@ public class MetadataFieldBuilder extends AbstractBuilder<MetadataField, Metadat
return metadataFieldBuilder.create(context, element, qualifier, scopeNote);
}
public static MetadataFieldBuilder createMetadataField(Context context, MetadataSchema schema, String element,
String qualifier, String scopeNote) throws SQLException, AuthorizeException {
MetadataFieldBuilder metadataFieldBuilder = new MetadataFieldBuilder(context);
return metadataFieldBuilder.create(context, schema, element, qualifier, scopeNote);
}
private MetadataFieldBuilder create(Context context, String element, String qualifier, String scopeNote)
throws SQLException, AuthorizeException {
create(context, metadataSchemaService.find(context, "dc"), element, qualifier, scopeNote);
return this;
}
private MetadataFieldBuilder create(Context context, MetadataSchema schema, String element, String qualifier,
String scopeNote) throws SQLException, AuthorizeException {
this.context = context;
try {
metadataField = metadataFieldService
.create(context, metadataSchemaService.find(context, "dc"), element, qualifier, scopeNote);
.create(context, schema, element, qualifier, scopeNote);
} catch (NonUniqueMetadataException e) {
e.printStackTrace();
}

5
dspace-spring-rest/src/test/java/org/dspace/app/rest/builder/MetadataSchemaBuilder.java
View File

@@ -24,6 +24,11 @@ public class MetadataSchemaBuilder extends AbstractBuilder<MetadataSchema, Metad
private MetadataSchema metadataSchema;
@Override
protected int getPriority() {
return Integer.MAX_VALUE;
}
protected MetadataSchemaBuilder(Context context) {
super(context);
}

2
dspace-spring-rest/src/test/java/org/dspace/app/rest/matcher/BitstreamMatcher.java
View File

@@ -34,7 +34,7 @@ public class BitstreamMatcher {
BitstreamMetadataMatcher.matchTitle(bitstream.getName()),
BitstreamMetadataMatcher.matchDescription(bitstream.getDescription())
)),
hasJsonPath("$.sizeBytes", is((int) bitstream.getSize())),
hasJsonPath("$.sizeBytes", is((int) bitstream.getSizeBytes())),
hasJsonPath("$.checkSum", matchChecksum()),
hasJsonPath("$._embedded.format", matchFormat()),
//Check links

3
dspace-spring-rest/src/test/java/org/dspace/app/rest/matcher/CollectionMatcher.java
View File

@@ -53,7 +53,8 @@ public class CollectionMatcher {
hasJsonPath("$._embedded.logo", Matchers.not(Matchers.empty()))
) :
allOf(
hasJsonPath("$._embedded.logo", BitstreamMatcher.matchBitstreamEntry(logo.getID(), logo.getSize()))
hasJsonPath("$._embedded.logo",
BitstreamMatcher.matchBitstreamEntry(logo.getID(), logo.getSizeBytes()))
);
}

11
dspace-spring-rest/src/test/java/org/dspace/app/rest/matcher/MetadataFieldMatcher.java
View File

@@ -40,4 +40,15 @@ public class MetadataFieldMatcher {
hasJsonPath("$._links.self.href", Matchers.containsString("/api/core/metadatafields"))
);
}
public static Matcher<? super Object> matchMetadataFieldByKeys(String schema, String element, String qualifier) {
return allOf(
hasJsonPath("$.element", is(element)),
hasJsonPath("$.qualifier", is(qualifier)),
hasJsonPath("$.type", is("metadatafield")),
hasJsonPath("$._embedded.schema.prefix", is(schema)),
hasJsonPath("$._links.schema.href", Matchers.containsString("/api/core/metadatafields")),
hasJsonPath("$._links.self.href", Matchers.containsString("/api/core/metadatafields"))
);
}
}

20
dspace-spring-rest/src/test/java/org/dspace/app/rest/test/AbstractControllerIntegrationTest.java
View File

@@ -16,9 +16,12 @@ import java.util.Arrays;
import java.util.List;
import javax.servlet.Filter;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import org.apache.commons.io.Charsets;
import org.apache.commons.lang.StringUtils;
import org.dspace.app.rest.Application;
import org.dspace.app.rest.model.patch.Operation;
import org.dspace.app.rest.security.WebSecurityConfiguration;
import org.dspace.app.rest.utils.ApplicationConfig;
import org.junit.Assert;
@@ -39,6 +42,7 @@ import org.springframework.test.context.support.DirtiesContextTestExecutionListe
import org.springframework.test.context.transaction.TransactionalTestExecutionListener;
import org.springframework.test.context.web.WebAppConfiguration;
import org.springframework.test.web.servlet.MockMvc;
import org.springframework.test.web.servlet.request.RequestPostProcessor;
import org.springframework.test.web.servlet.result.MockMvcResultHandlers;
import org.springframework.test.web.servlet.setup.DefaultMockMvcBuilder;
import org.springframework.web.context.WebApplicationContext;
@@ -119,5 +123,21 @@ public class AbstractControllerIntegrationTest extends AbstractIntegrationTestWi
return getAuthResponse(user, password).getHeader(AUTHORIZATION_HEADER);
}
public String getPatchContent(List<Operation> ops) {
ObjectMapper objectMapper = new ObjectMapper();
try {
return objectMapper.writeValueAsString(ops);
} catch (JsonProcessingException e) {
e.printStackTrace();
}
return null;
}
public static RequestPostProcessor ip(final String ipAddress) {
return request -> {
request.setRemoteAddr(ipAddress);
return request;
};
}
}

14
pom.xml
View File

@@ -1149,17 +1149,19 @@
<artifactId>commons-codec</artifactId>
<version>1.10</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
<!-- <version>3.1</version> xmlui - wing -->
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.1</version>
</dependency>
<!-- commons-collections v3 is still required by commons-beanutils,
which is required by commons-configuration. Once those are
upgraded, we should remove this dependency -->
<dependency>
<groupId>commons-collections</groupId>
<artifactId>commons-collections</artifactId>
<version>3.2.2</version>
</dependency>
<dependency>
<groupId>commons-configuration</groupId>
<artifactId>commons-configuration</artifactId>