mirror of
https://github.com/DSpace/DSpace.git
synced 2025-10-08 02:24:18 +00:00
bug fixes
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@@ -18,6 +18,7 @@ import java.util.Properties;
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import org.apache.commons.lang.StringUtils;
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import org.apache.commons.lang.StringUtils;
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import org.dspace.core.ConfigurationManager;
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import org.dspace.core.ConfigurationManager;
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import org.dspace.utils.DSpace;
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import gr.ekt.bte.core.AbstractModifier;
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import gr.ekt.bte.core.AbstractModifier;
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import gr.ekt.bte.core.MutableRecord;
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import gr.ekt.bte.core.MutableRecord;
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@@ -129,9 +129,12 @@ public class MultipleSubmissionLookupDataLoader implements DataLoader {
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* @see gr.ekt.bte.core.DataLoader#getRecords(gr.ekt.bte.core.DataLoadingSpec)
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* @see gr.ekt.bte.core.DataLoader#getRecords(gr.ekt.bte.core.DataLoadingSpec)
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*/
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*/
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@Override
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@Override
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public RecordSet getRecords(DataLoadingSpec arg0)
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public RecordSet getRecords(DataLoadingSpec loadingSpec)
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throws MalformedSourceException {
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throws MalformedSourceException {
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if (loadingSpec.getOffset()>0) //Identify the end of loading
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return new RecordSet();
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return getRecords();
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return getRecords();
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}
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}
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@@ -58,7 +58,7 @@ public class PubmedLookupProvider extends ConfigurableLookupProvider {
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Set<String> pmids = keys != null ? keys.get(PUBMED) : null;
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Set<String> pmids = keys != null ? keys.get(PUBMED) : null;
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Set<String> dois = keys != null ? keys.get(DOI) : null;
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Set<String> dois = keys != null ? keys.get(DOI) : null;
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List<Record> results = new ArrayList<Record>();
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List<Record> results = new ArrayList<Record>();
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if (pmids != null && pmids.size()>0 && dois == null) {
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if (pmids != null && pmids.size()>0 && (dois == null || dois.size()==0)) {
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for (String pmid : pmids){
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for (String pmid : pmids){
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PubmedItem p = null;
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PubmedItem p = null;
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try
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try
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@@ -73,7 +73,7 @@ public class PubmedLookupProvider extends ConfigurableLookupProvider {
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results.add(convert(p));
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results.add(convert(p));
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}
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}
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}
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}
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else if (dois != null && dois.size()>0 && pmids == null) {
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else if (dois != null && dois.size()>0 && (pmids == null || pmids.size()==0)) {
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StringBuffer query = new StringBuffer();
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StringBuffer query = new StringBuffer();
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for (String d : dois) {
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for (String d : dois) {
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if (query.length() > 0) {
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if (query.length() > 0) {
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@@ -87,7 +87,7 @@ public class PubmedLookupProvider extends ConfigurableLookupProvider {
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results.add(convert(p));
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results.add(convert(p));
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}
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}
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}
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}
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else
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else if (dois != null && dois.size()>0 && pmids != null && pmids.size()>0)
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{
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{
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//EKT:ToDo: support list of dois and pmids in the search method of pubmedService
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//EKT:ToDo: support list of dois and pmids in the search method of pubmedService
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List<PubmedItem> pubmedResults = pubmedService.search(dois.iterator().next(), pmids.iterator().next());
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List<PubmedItem> pubmedResults = pubmedService.search(dois.iterator().next(), pmids.iterator().next());
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@@ -56,7 +56,7 @@ public class SubmissionLookupOutputGenerator implements OutputGenerator {
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ItemSubmissionLookupDTO dto = new ItemSubmissionLookupDTO(entry.getValue());
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ItemSubmissionLookupDTO dto = new ItemSubmissionLookupDTO(entry.getValue());
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dtoList.add(dto);
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dtoList.add(dto);
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}
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}
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return null;
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return new ArrayList<String>();
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}
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}
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@Override
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@Override
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@@ -126,7 +126,7 @@ public class SubmissionLookupService {
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this.idents2provs = new HashMap<String, List<SubmissionLookupProvider>>();
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this.idents2provs = new HashMap<String, List<SubmissionLookupProvider>>();
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this.searchProviders = new ArrayList<SubmissionLookupProvider>();
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this.searchProviders = new ArrayList<SubmissionLookupProvider>();
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if (providers != null) {
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if (providers == null) {
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this.providers = new ArrayList<SubmissionLookupProvider>();
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this.providers = new ArrayList<SubmissionLookupProvider>();
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for (SubmissionLookupProvider p : dataLoader.getProviders()) {
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for (SubmissionLookupProvider p : dataLoader.getProviders()) {
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@@ -83,6 +83,7 @@ public class EnhancedSubmissionLookupPublication extends SubmissionLookupPublica
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{
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{
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EnhancerSubmissionLookup enhancer = enhancedMetadata.get(md);
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EnhancerSubmissionLookup enhancer = enhancedMetadata.get(md);
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List<String> values = enhancer.getValues(this);
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List<String> values = enhancer.getValues(this);
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if (values != null && values.size()>0) {
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List<Value> valuesvalues = new ArrayList<Value>();
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List<Value> valuesvalues = new ArrayList<Value>();
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for (String s : values){
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for (String s : values){
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valuesvalues.add(new StringValue(s));
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valuesvalues.add(new StringValue(s));
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@@ -91,6 +92,8 @@ public class EnhancedSubmissionLookupPublication extends SubmissionLookupPublica
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return valuesvalues;
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return valuesvalues;
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}
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}
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}
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}
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return null;
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}
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else
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else
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{
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{
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return lookupPublication.getValues(md);
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return lookupPublication.getValues(md);
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@@ -80,6 +80,9 @@ public class SubmissionLookupPublication implements MutableRecord, Serializable
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@Override
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@Override
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public List<Value> getValues(String md) {
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public List<Value> getValues(String md) {
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List<String> stringValues = storage.get(md);
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List<String> stringValues = storage.get(md);
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if (stringValues == null){
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return null;
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}
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List<Value> values = new ArrayList<Value>();
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List<Value> values = new ArrayList<Value>();
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for (String value : stringValues){
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for (String value : stringValues){
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values.add(new StringValue(value));
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values.add(new StringValue(value));
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@@ -59,6 +59,7 @@
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<bean name="transformationEngine" class="gr.ekt.bte.core.TransformationEngine">
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<bean name="transformationEngine" class="gr.ekt.bte.core.TransformationEngine">
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<property name="dataLoader" ref="multipleDataLoader"/>
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<property name="dataLoader" ref="multipleDataLoader"/>
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<property name="workflow" ref="linearWorkflow"/>
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<property name="workflow" ref="linearWorkflow"/>
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<property name="outputGenerator" ref="org.dspace.submit.lookup.SubmissionLookupOutputGenerator"/>
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</bean>
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</bean>
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<bean name="multipleDataLoader" class="org.dspace.submit.lookup.MultipleSubmissionLookupDataLoader">
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<bean name="multipleDataLoader" class="org.dspace.submit.lookup.MultipleSubmissionLookupDataLoader">
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@@ -72,6 +73,8 @@
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</bean>
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</bean>
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<bean name="org.dspace.submit.lookup.SubmissionLookupOutputGenerator" class="org.dspace.submit.lookup.SubmissionLookupOutputGenerator"/>
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<!-- Specify here any filters or modifiers to run before the output -->
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<!-- Specify here any filters or modifiers to run before the output -->
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<bean name="linearWorkflow" class="gr.ekt.bte.core.LinearWorkflow">
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<bean name="linearWorkflow" class="gr.ekt.bte.core.LinearWorkflow">
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<property name="process">
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<property name="process">
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@@ -83,8 +86,7 @@
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</property>
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</property>
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</bean>
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</bean>
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<bean name="mapConverter_arxivSubject" class="org.dspace.submit.lookup.MapConverterModifier"
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<bean name="mapConverter_arxivSubject" class="org.dspace.submit.lookup.MapConverterModifier">
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init-method="init">
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<constructor-arg value="apConverter_arxivSubject Modifier"/>
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<constructor-arg value="apConverter_arxivSubject Modifier"/>
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<property name="filename" value="mapConverter-arxivSubject.properties"/>
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<property name="filename" value="mapConverter-arxivSubject.properties"/>
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<property name="fieldKeys">
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<property name="fieldKeys">
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@@ -94,8 +96,7 @@
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</property>
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</property>
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</bean>
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</bean>
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<bean name="mapConverter_pubstatusPubmed" class="org.dspace.submit.lookup.MapConverterModifier"
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<bean name="mapConverter_pubstatusPubmed" class="org.dspace.submit.lookup.MapConverterModifier">
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init-method="init">
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<constructor-arg value="mapConverter_pubstatusPubmed Modifier"/>
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<constructor-arg value="mapConverter_pubstatusPubmed Modifier"/>
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<property name="filename" value="mapConverter-pubstatusPubmed.properties"/>
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<property name="filename" value="mapConverter-pubstatusPubmed.properties"/>
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<property name="fieldKeys">
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<property name="fieldKeys">
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