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Upgrade to r-base 3.3.2

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Remove pinning for plotting fix and upgrade other R packages
This commit is contained in:
Peter Parente
2017-01-02 23:11:30 -05:00
parent 6018daa193
commit 012b408e73
4 changed files with 23 additions and 29 deletions
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5
all-spark-notebook/Dockerfile
View File

@@ -20,12 +20,11 @@ RUN apt-get update && \
USER $NB_USER USER $NB_USER
# R packages # R packages
# Pin r-base to a specific build number for https://github.com/jupyter/docker-stacks/issues/210#issuecomment-246081809
RUN conda config --add channels r && \ RUN conda config --add channels r && \
conda install --quiet --yes \ conda install --quiet --yes \
'r-base=3.3.1 1' \ 'r-base=3.3.2' \
'r-irkernel=0.7*' \ 'r-irkernel=0.7*' \
'r-ggplot2=2.1*' \ 'r-ggplot2=2.2*' \
'r-rcurl=1.95*' && conda clean -tipsy 'r-rcurl=1.95*' && conda clean -tipsy
# Apache Toree kernel # Apache Toree kernel

4
base-notebook/Dockerfile
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@@ -66,10 +66,6 @@ RUN cd /tmp && \
$CONDA_DIR/bin/conda config --system --set auto_update_conda false && \ $CONDA_DIR/bin/conda config --system --set auto_update_conda false && \
conda clean -tipsy conda clean -tipsy
# Temporary workaround for https://github.com/jupyter/docker-stacks/issues/210
# Stick with jpeg 8 to avoid problems with R packages
RUN echo "jpeg 8*" >> /opt/conda/conda-meta/pinned
# Install Jupyter Notebook and Hub # Install Jupyter Notebook and Hub
RUN conda install --quiet --yes \ RUN conda install --quiet --yes \
'notebook=4.3*' \ 'notebook=4.3*' \

22
datascience-notebook/Dockerfile
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@@ -26,26 +26,26 @@ RUN echo "deb http://ppa.launchpad.net/staticfloat/juliareleases/ubuntu trusty m
USER $NB_USER USER $NB_USER
# R packages including IRKernel which gets installed globally. # R packages including IRKernel which gets installed globally.
# Pin r-base to a specific build number for https://github.com/jupyter/docker-stacks/issues/210#issuecomment-246081809
RUN conda config --add channels r && \ RUN conda config --add channels r && \
conda install --quiet --yes \ conda install --quiet --yes \
'rpy2=2.8*' \ 'rpy2=2.8*' \
'r-base=3.3.1 1' \ 'r-base=3.3.2' \
'r-irkernel=0.7*' \ 'r-irkernel=0.7*' \
'r-plyr=1.8*' \ 'r-plyr=1.8*' \
'r-devtools=1.11*' \ 'r-devtools=1.12*' \
'r-dplyr=0.4*' \ 'r-dplyr=0.5*' \
'r-ggplot2=2.1*' \ 'r-ggplot2=2.2*' \
'r-tidyr=0.5*' \ 'r-tidyr=0.6*' \
'r-shiny=0.13*' \ 'r-shiny=0.14*' \
'r-rmarkdown=0.9*' \ 'r-rmarkdown=1.2*' \
'r-forecast=7.1*' \ 'r-forecast=7.3*' \
'r-stringr=1.0*' \ 'r-stringr=1.1*' \
'r-rsqlite=1.0*' \ 'r-rsqlite=1.1*' \
'r-reshape2=1.4*' \ 'r-reshape2=1.4*' \
'r-nycflights13=0.2*' \ 'r-nycflights13=0.2*' \
'r-caret=6.0*' \ 'r-caret=6.0*' \
'r-rcurl=1.95*' \ 'r-rcurl=1.95*' \
'r-crayon=1.3*' \
'r-randomforest=4.6*' && conda clean -tipsy 'r-randomforest=4.6*' && conda clean -tipsy
# Install IJulia packages as jovyan and then move the kernelspec out # Install IJulia packages as jovyan and then move the kernelspec out

21
r-notebook/Dockerfile
View File

@@ -17,21 +17,20 @@ RUN apt-get update && \
USER $NB_USER USER $NB_USER
# R packages # R packages
# Pin r-base to a specific build number for https://github.com/jupyter/docker-stacks/issues/210#issuecomment-246081809
RUN conda config --add channels r && \ RUN conda config --add channels r && \
conda install --quiet --yes \ conda install --quiet --yes \
'r-base=3.3.1 1' \ 'r-base=3.3.2' \
'r-irkernel=0.7*' \ 'r-irkernel=0.7*' \
'r-plyr=1.8*' \ 'r-plyr=1.8*' \
'r-devtools=1.11*' \ 'r-devtools=1.12*' \
'r-dplyr=0.4*' \ 'r-dplyr=0.5*' \
'r-ggplot2=2.1*' \ 'r-ggplot2=2.2*' \
'r-tidyr=0.5*' \ 'r-tidyr=0.6*' \
'r-shiny=0.13*' \ 'r-shiny=0.14*' \
'r-rmarkdown=0.9*' \ 'r-rmarkdown=1.2*' \
'r-forecast=7.1*' \ 'r-forecast=7.3*' \
'r-stringr=1.0*' \ 'r-stringr=1.1*' \
'r-rsqlite=1.0*' \ 'r-rsqlite=1.1*' \
'r-reshape2=1.4*' \ 'r-reshape2=1.4*' \
'r-nycflights13=0.2*' \ 'r-nycflights13=0.2*' \
'r-caret=6.0*' \ 'r-caret=6.0*' \