diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
index 4f8eb6a5..81dbe7e4 100644
--- a/.github/workflows/docker.yml
+++ b/.github/workflows/docker.yml
@@ -43,6 +43,8 @@ jobs:
           make -C main dev-env lint-install
       - name: Lint Dockerfiles
         run: make -C main lint-all
+      - name: Run pre-commit hooks
+        run: make -C main pre-commit-all
       - name: Build Docker Images
         run: make -C main build-test-all
       - name: Run Post-Build Hooks
diff --git a/Makefile b/Makefile
index cae82ae2..49adba92 100644
--- a/Makefile
+++ b/Makefile
@@ -136,10 +136,10 @@ lint-install: ## install hadolint
 	@curl -sL -o $(HADOLINT) "https://github.com/hadolint/hadolint/releases/download/$(HADOLINT_VERSION)/hadolint-$(shell uname -s)-$(shell uname -m)"
 	@chmod 700 $(HADOLINT)
 	@echo "Installation done!"
-	@$(HADOLINT) --version	
+	@$(HADOLINT) --version
 
 pre-commit-all: ## run pre-commit hook on all files
-	@pre-commit run --all 
+	@pre-commit run --all-files
 
 pre-commit-install: ## set up the git hook scripts
 	@pre-commit --version
diff --git a/datascience-notebook/hooks/run_hook b/datascience-notebook/hooks/run_hook
index f60b8f37..9a68d7d5 100755
--- a/datascience-notebook/hooks/run_hook
+++ b/datascience-notebook/hooks/run_hook
@@ -75,4 +75,4 @@ $(docker run --rm ${IMAGE_NAME} R --silent -e 'installed.packages(.Library)[, c(
 \`\`\`
 $(docker run --rm ${IMAGE_NAME} apt list --installed)
 \`\`\`
-EOF
\ No newline at end of file
+EOF