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Merge pull request #386 from minrk/system-julia

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install Julia packages in /opt/julia
This commit is contained in:
Peter Parente
2017-05-26 22:22:29 -04:00
committed by GitHub
parent bb222f4922 f67f974c3d
commit 174fc496c0
1 changed files with 23 additions and 10 deletions
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datascience-notebook/Dockerfile
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@@ -15,13 +15,21 @@ RUN apt-get update && \
rm -rf /var/lib/apt/lists/*
# Julia dependencies
# install Julia packages in /opt/julia instead of $HOME
ENV JULIA_PKGDIR=/opt/julia
RUN echo "deb http://ppa.launchpad.net/staticfloat/juliareleases/ubuntu trusty main" > /etc/apt/sources.list.d/julia.list && \
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 3D3D3ACC && \
apt-get update && \
apt-get install -y --no-install-recommends \
julia \
libnettle4 && apt-get clean && \
rm -rf /var/lib/apt/lists/*
rm -rf /var/lib/apt/lists/* && \
# Show Julia where conda libraries are \
echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /usr/etc/julia/juliarc.jl && \
# Create JULIA_PKGDIR \
mkdir $JULIA_PKGDIR && \
chown -R $NB_USER:users $JULIA_PKGDIR
USER $NB_USER
@@ -45,18 +53,23 @@ RUN conda config --system --add channels r && \
'r-crayon=1.3*' \
'r-randomforest=4.6*' && conda clean -tipsy
# Install IJulia packages as jovyan and then move the kernelspec out
# Add Julia packages
# Install IJulia as jovyan and then move the kernelspec out
# to the system share location. Avoids problems with runtime UID change not
# taking effect properly on the .local folder in the jovyan home dir.
RUN julia -e 'Pkg.add("IJulia")' && \
RUN julia -e 'Pkg.init()' && \
julia -e 'Pkg.update()' && \
julia -e 'Pkg.add("HDF5")' && \
julia -e 'Pkg.add("Gadfly")' && \
julia -e 'Pkg.add("RDatasets")' && \
julia -e 'Pkg.add("IJulia")' && \
# Precompile Julia packages \
julia -e 'using HDF5' && \
julia -e 'using Gadfly' && \
julia -e 'using RDatasets' && \
julia -e 'using IJulia' && \
# move kernelspec out of home \
mv $HOME/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
chmod -R go+rx $CONDA_DIR/share/jupyter && \
rm -rf $HOME/.local
# Show Julia where conda libraries are
# Add essential packages
RUN echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" > /home/$NB_USER/.juliarc.jl && \
julia -e 'Pkg.add("Gadfly")' && julia -e 'Pkg.add("RDatasets")' && julia -F -e 'Pkg.add("HDF5")'
# Precompile Julia pakcages
RUN julia -e 'using IJulia' && julia -e 'using Gadfly' && julia -e 'using RDatasets'&& julia -e 'using HDF5'