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Fix conda hook to work in both terminal and Jupyter Notebook (#2047)

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* Fix conda hook to work in both terminal and Jupyter Notebook

* Fix hook for Jupyter Terminals

* Rename startup hook to have order of precedence

* Try to increase sleep

* Comment making env_name default in custom_environment
This commit is contained in:
Ayaz Salikhov
2023-12-04 21:09:23 +01:00
committed by GitHub
parent 2927745fb2
commit 3253fc39b5
4 changed files with 25 additions and 15 deletions
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23
docs/using/recipe_code/custom_environment.dockerfile
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@@ -28,17 +28,16 @@ RUN "${CONDA_DIR}/envs/${env_name}/bin/python" -m ipykernel install --user --nam
RUN "${CONDA_DIR}/envs/${env_name}/bin/pip" install --no-cache-dir \
'flake8'
# Creating a startup hook, which will activate our custom environment by default in Jupyter Notebook
# More info about startup hooks: https://jupyter-docker-stacks.readthedocs.io/en/latest/using/common.html#startup-hooks
# You can comment this section to keep the default environment in Jupyter Notebook
USER root
RUN activate_custom_env_script=/usr/local/bin/before-notebook.d/activate_custom_env.sh && \
echo "#!/bin/bash" > ${activate_custom_env_script} && \
echo "eval \"$(conda shell.bash activate "${env_name}")\"" >> ${activate_custom_env_script} && \
chmod +x ${activate_custom_env_script}
# Uncomment this section to activate custom environment by default
# Note: uncommenting this section makes "${env_name}" default both for Jupyter Notebook and Terminals
# More information here: https://github.com/jupyter/docker-stacks/pull/2047
# USER root
# RUN \
# # This changes a startup hook, which will activate our custom environment for the process
# echo conda activate "${env_name}" >> /usr/local/bin/before-notebook.d/10activate-conda-env.sh && \
# # This makes the custom environment default in Jupyter Terminals for all users which might be created later
# echo conda activate "${env_name}" >> /etc/skel/.bashrc && \
# # This makes the custom environment default in Jupyter Terminals for already existing NB_USER
# echo conda activate "${env_name}" >> "/home/${NB_USER}/.bashrc"
USER ${NB_UID}
# Making this environment default in Terminal
# You can comment this line to keep the default environment in a Terminal
RUN echo "conda activate ${env_name}" >> "${HOME}/.bashrc"