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Install Pluto.jl and jupyter-pluto-proxy (#1929)
* Install Pluto.jl and jupyter-pluto-proxy [Pluto.jl](https://plutojl.org/) is an alternative reactive notebook frontend focused specifically on Julia. I think shipping this by default in the julia-enabled images helps serve the Julia community better, particularly when used with JupyterHub. For context, I am working with the Julia users of the [Jupyter Meets the Earth](https://jupytearth.org/) project, and trying to understand how to best serve their needs on a JupyterHub. We currently maintain a massive image that 'has everything', but I'm trying to instead work upstream wherever possible so everyone working in these subfields can benefit. Meeting Julia users where they are at seems a useful path forward here. * Add note about Pluto.jl to selecting.md * Default to replacing - with _ in package imports * Add jupyter-pluto-proxy to package import mapping * Add Pluto.jl to datascience-notebook image * Add test for pluto proxy starting correctly * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update test_packages.py --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Ayaz Salikhov <mathbunnyru@users.noreply.github.com>
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@@ -118,6 +118,8 @@ It contains:
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- Everything in `jupyter/minimal-notebook` and its ancestor images
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- The [Julia Programming Language](https://julialang.org/)
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- [IJulia](https://github.com/JuliaLang/IJulia.jl) to support Julia code in Jupyter notebook
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- [Pluto.jl](https://plutojl.org/) reactive Julia notebook interface, made accessible with [jupyter-pluto-proxy](https://github.com/yuvipanda/jupyter-pluto-proxy)
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- [HDF5](https://github.com/JuliaIO/HDF5.jl) package
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### jupyter/scipy-notebook
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@@ -188,6 +190,7 @@ communities.
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- [rpy2](https://rpy2.github.io/doc/latest/html/index.html) package
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- The [Julia](https://julialang.org/) compiler and base environment
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- [IJulia](https://github.com/JuliaLang/IJulia.jl) to support Julia code in Jupyter notebooks
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- [Pluto.jl](https://plutojl.org/) reactive Julia notebook interface, made accessible with [jupyter-pluto-proxy](https://github.com/yuvipanda/jupyter-pluto-proxy)
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- [HDF5](https://github.com/JuliaIO/HDF5.jl) package
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### jupyter/pyspark-notebook
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@@ -11,7 +11,8 @@ import Pkg;
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Pkg.update();
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Pkg.add([
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"HDF5",
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"IJulia"
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"IJulia",
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"Pluto"
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]);
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Pkg.precompile();
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'
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@@ -23,3 +24,10 @@ mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/ker
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chmod -R go+rx "${CONDA_DIR}/share/jupyter"
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rm -rf "${HOME}/.local"
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fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter"
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# Install jupyter-pluto-proxy to get Pluto to work on JupyterHub
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mamba install --yes \
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'jupyter-pluto-proxy' && \
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mamba clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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@@ -52,6 +52,7 @@ LOGGER = logging.getLogger(__name__)
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PACKAGE_MAPPING = {
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# Python
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"beautifulsoup4": "bs4",
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"jupyter-pluto-proxy": "jupyter_pluto_proxy",
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"matplotlib-base": "matplotlib",
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"pytables": "tables",
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"scikit-image": "skimage",
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32
tests/datascience-notebook/test_julia_starts.py
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32
tests/datascience-notebook/test_julia_starts.py
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@@ -0,0 +1,32 @@
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import logging
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import secrets
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import time
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import requests
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from tests.conftest import TrackedContainer, find_free_port
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LOGGER = logging.getLogger(__name__)
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def test_pluto_proxy(
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container: TrackedContainer, http_client: requests.Session
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) -> None:
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"""Pluto proxy starts Pluto correctly"""
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host_port = find_free_port()
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token = secrets.token_hex()
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container.run_detached(
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command=[
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"start.sh",
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"jupyter",
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"lab",
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"--port=8888",
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f"--LabApp.token={token}",
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],
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ports={"8888/tcp": host_port},
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)
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# Give the server a bit of time to start
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time.sleep(3)
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resp = http_client.get(f"http://localhost:{host_port}/pluto?token={token}")
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resp.raise_for_status()
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assert "Pluto.jl notebooks" in resp.text, "Pluto.jl text not found in /pluto page"
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tests/julia-notebook/test_pluto.py
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32
tests/julia-notebook/test_pluto.py
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@@ -0,0 +1,32 @@
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import logging
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import secrets
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import time
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import requests
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from tests.conftest import TrackedContainer, find_free_port
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LOGGER = logging.getLogger(__name__)
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def test_pluto_proxy(
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container: TrackedContainer, http_client: requests.Session
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) -> None:
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"""Pluto proxy starts Pluto correctly"""
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host_port = find_free_port()
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token = secrets.token_hex()
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container.run_detached(
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command=[
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"start.sh",
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"jupyter",
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"lab",
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"--port=8888",
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f"--LabApp.token={token}",
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],
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ports={"8888/tcp": host_port},
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)
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# Give the server a bit of time to start
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time.sleep(3)
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resp = http_client.get(f"http://localhost:{host_port}/pluto?token={token}")
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resp.raise_for_status()
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assert "Pluto.jl notebooks" in resp.text, "Pluto.jl text not found in /pluto page"
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