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JupyterLab 3.0 and other updates

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This commit is contained in:
romainx
2021-01-22 09:36:22 +01:00
parent c42722bb94
commit 92289757d2
5 changed files with 17 additions and 24 deletions
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4
base-notebook/Dockerfile
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@@ -4,7 +4,7 @@
# Ubuntu 20.04 (focal) # Ubuntu 20.04 (focal)
# https://hub.docker.com/_/ubuntu/?tab=tags&name=focal # https://hub.docker.com/_/ubuntu/?tab=tags&name=focal
# OS/ARCH: linux/amd64 # OS/ARCH: linux/amd64
ARG ROOT_CONTAINER=ubuntu:focal-20201106@sha256:4e4bc990609ed865e07afc8427c30ffdddca5153fd4e82c20d8f0783a291e241 ARG ROOT_CONTAINER=ubuntu:focal-20210119@sha256:3093096ee188f8ff4531949b8f6115af4747ec1c58858c091c8cb4579c39cc4e
ARG BASE_CONTAINER=$ROOT_CONTAINER ARG BASE_CONTAINER=$ROOT_CONTAINER
FROM $BASE_CONTAINER FROM $BASE_CONTAINER
@@ -135,7 +135,7 @@ RUN conda install --quiet --yes \
'jedi=0.17.2' \ 'jedi=0.17.2' \
'notebook=6.2.0' \ 'notebook=6.2.0' \
'jupyterhub=1.3.0' \ 'jupyterhub=1.3.0' \
'jupyterlab=2.2.9' && \ 'jupyterlab=3.0.5' && \
conda clean --all -f -y && \ conda clean --all -f -y && \
npm cache clean --force && \ npm cache clean --force && \
jupyter notebook --generate-config && \ jupyter notebook --generate-config && \

2
datascience-notebook/Dockerfile
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@@ -74,7 +74,7 @@ RUN conda install --quiet --yes \
'r-rsqlite=2.2*' \ 'r-rsqlite=2.2*' \
'r-shiny=1.5*' \ 'r-shiny=1.5*' \
'r-tidyverse=1.3*' \ 'r-tidyverse=1.3*' \
'rpy2=3.3*' && \ 'rpy2=3.4*' && \
conda clean --all -f -y && \ conda clean --all -f -y && \
fix-permissions "${CONDA_DIR}" && \ fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}" fix-permissions "/home/${NB_USER}"

24
scipy-notebook/Dockerfile
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@@ -22,43 +22,29 @@ RUN conda install --quiet --yes \
'bottleneck=1.3.*' \ 'bottleneck=1.3.*' \
'cloudpickle=1.6.*' \ 'cloudpickle=1.6.*' \
'cython=0.29.*' \ 'cython=0.29.*' \
'dask=2020.12.*' \ 'dask=2021.1.*' \
'dill=0.3.*' \ 'dill=0.3.*' \
'h5py=3.1.*' \ 'h5py=3.1.*' \
'ipywidgets=7.6.*' \ 'ipywidgets=7.6.*' \
'ipympl=0.5.*'\ 'ipympl=0.6.*'\
'matplotlib-base=3.3.*' \ 'matplotlib-base=3.3.*' \
'numba=0.52.*' \ 'numba=0.52.*' \
'numexpr=2.7.*' \ 'numexpr=2.7.*' \
'pandas=1.1.*' \ 'pandas=1.2.*' \
'patsy=0.5.*' \ 'patsy=0.5.*' \
'protobuf=3.14.*' \ 'protobuf=3.14.*' \
'pytables=3.6.*' \ 'pytables=3.6.*' \
'scikit-image=0.18.*' \ 'scikit-image=0.18.*' \
'scikit-learn=0.24.*' \ 'scikit-learn=0.24.*' \
'scipy=1.5.*' \ 'scipy=1.6.*' \
'seaborn=0.11.*' \ 'seaborn=0.11.*' \
'sqlalchemy=1.3.*' \ 'sqlalchemy=1.3.*' \
'statsmodels=0.12.*' \ 'statsmodels=0.12.*' \
'sympy=1.7.*' \ 'sympy=1.7.*' \
'vincent=0.4.*' \ 'vincent=0.4.*' \
'widgetsnbextension=3.5.*'\ 'widgetsnbextension=3.5.*'\
'xlrd=1.2.*' \ 'xlrd=2.0.*' && \
&& \
conda clean --all -f -y && \ conda clean --all -f -y && \
# Activate ipywidgets extension in the environment that runs the notebook server
jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
# Also activate ipywidgets extension for JupyterLab
# Check this URL for most recent compatibilities
# https://github.com/jupyter-widgets/ipywidgets/tree/master/packages/jupyterlab-manager
jupyter labextension install @jupyter-widgets/jupyterlab-manager@^2.0.0 --no-build && \
jupyter labextension install @bokeh/jupyter_bokeh@^2.0.0 --no-build && \
jupyter labextension install jupyter-matplotlib@^0.7.2 --no-build && \
jupyter lab build -y && \
jupyter lab clean -y && \
npm cache clean --force && \
rm -rf "/home/${NB_USER}/.cache/yarn" && \
rm -rf "/home/${NB_USER}/.node-gyp" && \
fix-permissions "${CONDA_DIR}" && \ fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}" fix-permissions "/home/${NB_USER}"

9
scipy-notebook/test/test_extensions.py
View File

@@ -7,6 +7,7 @@ import pytest
LOGGER = logging.getLogger(__name__) LOGGER = logging.getLogger(__name__)
@pytest.mark.skip(reason="Not yet compliant with JupyterLab 3")
@pytest.mark.parametrize( @pytest.mark.parametrize(
"extension", "extension",
[ [
@@ -16,7 +17,13 @@ LOGGER = logging.getLogger(__name__)
], ],
) )
def test_check_extension(container, extension): def test_check_extension(container, extension):
"""Basic check of each extension""" """Basic check of each extension
The list of extensions can be obtained through this command
$ jupyter labextension list
"""
LOGGER.info(f"Checking the extension: {extension} ...") LOGGER.info(f"Checking the extension: {extension} ...")
c = container.run( c = container.run(
tty=True, command=["start.sh", "jupyter", "labextension", "check", extension] tty=True, command=["start.sh", "jupyter", "labextension", "check", extension]

2
tensorflow-notebook/Dockerfile
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@@ -7,6 +7,6 @@ LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
# Install Tensorflow # Install Tensorflow
RUN pip install --quiet --no-cache-dir \ RUN pip install --quiet --no-cache-dir \
'tensorflow==2.4.0' && \ 'tensorflow==2.4.1' && \
fix-permissions "${CONDA_DIR}" && \ fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}" fix-permissions "/home/${NB_USER}"