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Fix custom conda environment recipe

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This commit is contained in:
Ayaz Salikhov
2023-07-28 22:19:09 +04:00
parent 46e92f69ac
commit 9dffd42758
3 changed files with 38 additions and 33 deletions
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1
.github/workflows/contributed-recipes.yml vendored
View File

@@ -38,6 +38,7 @@ jobs:
matrix:
dockerfile:
[
custom_environment.dockerfile,
dask_jupyterlab.dockerfile,
jupyterhub_version.dockerfile,
mamba_install.dockerfile,

33
docs/using/recipe_code/custom_environment.dockerfile Normal file
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@@ -0,0 +1,33 @@
FROM jupyter/base-notebook
# name your environment and choose the python version
ARG env_name=python38
ARG py_ver=3.8
# you can add additional libraries here
RUN mamba create --yes -p "${CONDA_DIR}/envs/${env_name}" \
python=${py_ver} \
'ipykernel' \
'jupyterlab' && \
mamba clean --all -f -y
# alternatively, you can comment out the lines above and uncomment those below
# if you'd prefer to use a YAML file present in the docker build context
# COPY --chown=${NB_UID}:${NB_GID} environment.yml /tmp/
# RUN mamba env create -p "${CONDA_DIR}/envs/${env_name}" -f /tmp/environment.yml && \
# mamba clean --all -f -y
# create Python kernel and link it to jupyter
RUN "${CONDA_DIR}/envs/${env_name}/bin/python" -m ipykernel install --user --name="${env_name}" && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# any additional `pip` installs can be added by using the following line
# using `mamba` is highly recommended
RUN "${CONDA_DIR}/envs/${env_name}/bin/pip" install --no-cache-dir \
'flake8'
# if you do not want this environment to be the default one, comment this line
# hadolint ignore=DL3059
RUN echo "conda activate ${env_name}" >> "${HOME}/.bashrc"

37
docs/using/recipes.md
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@@ -46,42 +46,13 @@ docker build --rm --tag my-custom-image .
## Add a custom conda environment and Jupyter kernel
```{warning}
This recipe is not tested and might be broken.
```
The default version of Python that ships with the image may not be the version you want.
The instructions below permit adding a conda environment with a different Python version and making it accessible to Jupyter.
You may also use older image like `jupyter/base-notebook:python-3.10`.
List of all tags can be found [here](https://github.com/jupyter/docker-stacks/wiki)
```dockerfile
FROM jupyter/minimal-notebook
# name your environment and choose the python version
ARG conda_env=python37
ARG py_ver=3.7
# you can add additional libraries you want mamba to install by listing them below the first line and ending with "&& \"
RUN mamba create --yes -p "${CONDA_DIR}/envs/${conda_env}" python=${py_ver} ipython ipykernel && \
mamba clean --all -f -y
# alternatively, you can comment out the lines above and uncomment those below
# if you'd prefer to use a YAML file present in the docker build context
# COPY --chown=${NB_UID}:${NB_GID} environment.yml "/home/${NB_USER}/tmp/"
# RUN cd "/home/${NB_USER}/tmp/" && \
# mamba env create -p "${CONDA_DIR}/envs/${conda_env}" -f environment.yml && \
# mamba clean --all -f -y
# create Python kernel and link it to jupyter
RUN "${CONDA_DIR}/envs/${conda_env}/bin/python" -m ipykernel install --user --name="${conda_env}" && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# any additional pip installs can be added by uncommenting the following line
# RUN "${CONDA_DIR}/envs/${conda_env}/bin/pip" install --no-cache-dir
# if you want this environment to be the default one, uncomment the following line:
# RUN echo "conda activate ${conda_env}" >> "${HOME}/.bashrc"
```{literalinclude} recipe_code/custom_environment.dockerfile
:language: docker
```
## Dask JupyterLab Extension