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Fix for issue #30, missing ijulia

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Contribution (c) Copyright IBM Corp. 2015
This commit is contained in:
Peter Parente
2015-09-10 23:41:53 -04:00
parent dba9977525
commit b6ecf61df2
1 changed files with 19 additions and 7 deletions
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datascience-notebook/Dockerfile
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@@ -18,6 +18,8 @@ RUN apt-get update && \
julia \ julia \
libnettle4 && apt-get clean libnettle4 && apt-get clean
USER jovyan
# Install Python 3 packages # Install Python 3 packages
RUN conda install --yes \ RUN conda install --yes \
'ipywidgets=4.0*' \ 'ipywidgets=4.0*' \
@@ -37,7 +39,7 @@ RUN conda install --yes \
'bokeh=0.9*' \ 'bokeh=0.9*' \
&& conda clean -yt && conda clean -yt
# Install Python 2 packages and kernel spec # Install Python 2 packages
RUN conda create -p $CONDA_DIR/envs/python2 python=2.7 \ RUN conda create -p $CONDA_DIR/envs/python2 python=2.7 \
'ipython=4.0*' \ 'ipython=4.0*' \
'ipywidgets=4.0*' \ 'ipywidgets=4.0*' \
@@ -57,11 +59,8 @@ RUN conda create -p $CONDA_DIR/envs/python2 python=2.7 \
'bokeh=0.9*' \ 'bokeh=0.9*' \
pyzmq \ pyzmq \
&& conda clean -yt && conda clean -yt
RUN $CONDA_DIR/envs/python2/bin/python \
$CONDA_DIR/envs/python2/bin/ipython \
kernelspec install-self
# R packages # R packages including IRKernel which gets installed globally.
RUN conda config --add channels r RUN conda config --add channels r
RUN conda install --yes \ RUN conda install --yes \
'r-base=3.2*' \ 'r-base=3.2*' \
@@ -82,6 +81,19 @@ RUN conda install --yes \
'r-rcurl=1.95*' \ 'r-rcurl=1.95*' \
'r-randomforest=4.6*' && conda clean -yt 'r-randomforest=4.6*' && conda clean -yt
# IJulia and Julia packages # Install IJulia packages as jovyan and then move the kernelspec out
RUN julia -e 'Pkg.add("IJulia")' # to the system share location. Avoids problems with runtime UID change not
# taking effect properly on the .local folder in the jovyan home dir.
RUN julia -e 'Pkg.add("IJulia")' && \
mv /home/$NB_USER/.local/share/jupyter/kernels/* $CONDA_DIR/share/jupyter/kernels/ && \
chmod -R go+rx $CONDA_DIR/share/jupyter && \
rm -rf /home/$NB_USER/.local/share
RUN julia -e 'Pkg.add("Gadfly")' && julia -e 'Pkg.add("RDatasets")' RUN julia -e 'Pkg.add("Gadfly")' && julia -e 'Pkg.add("RDatasets")'
USER root
# Install Python 2 kernel spec globally to avoid permission problems when NB_UID
# switching at runtime.
RUN $CONDA_DIR/envs/python2/bin/python \
$CONDA_DIR/envs/python2/bin/ipython \
kernelspec install-self