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More installation updates
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@@ -137,7 +137,7 @@ conda install --channel defaults humanize
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conda config --system --prepend channels defaults
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# install a package
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conda install --quiet --yes humanize && \
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mamba clean --all -f -y && \
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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@@ -32,7 +32,9 @@ Create a new Dockerfile like the one shown below.
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# Start from a core stack version
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FROM jupyter/datascience-notebook:33add21fab64
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# Install in the default python3 environment
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RUN pip install 'ggplot==0.6.8'
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RUN pip install --quiet --no-cache-dir 'flake8==3.9.2' && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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Then build a new image.
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@@ -49,9 +51,9 @@ packages desired. Next, create a new Dockerfile like the one shown below.
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FROM jupyter/datascience-notebook:33add21fab64
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# Install from requirements.txt file
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COPY --chown=${NB_UID}:${NB_GID} requirements.txt /tmp/
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RUN pip install --requirement /tmp/requirements.txt && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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RUN pip install --quiet --no-cache-dir --requirement /tmp/requirements.txt && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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For conda, the Dockerfile is similar:
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@@ -62,8 +64,9 @@ FROM jupyter/datascience-notebook:33add21fab64
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# Install from requirements.txt file
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COPY --chown=${NB_UID}:${NB_GID} requirements.txt /tmp/
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RUN conda install --yes --file /tmp/requirements.txt && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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Ref: [docker-stacks/commit/79169618d571506304934a7b29039085e77db78c](https://github.com/jupyter/docker-stacks/commit/79169618d571506304934a7b29039085e77db78c#commitcomment-15960081)
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@@ -124,8 +127,8 @@ RUN conda create --quiet --yes -p $CONDA_DIR/envs/$conda_env python=$py_ver ipyt
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# create Python 3.x environment and link it to jupyter
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RUN $CONDA_DIR/envs/${conda_env}/bin/python -m ipykernel install --user --name=${conda_env} && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# any additional pip installs can be added by uncommenting the following line
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# RUN $CONDA_DIR/envs/${conda_env}/bin/pip install
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@@ -154,7 +157,9 @@ Run jupyterlab using a command such as
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FROM jupyter/scipy-notebook:latest
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# Install the Dask dashboard
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RUN pip install dask-labextension
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RUN pip install --quiet --no-cache-dir dask-labextension && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# Dask Scheduler & Bokeh ports
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EXPOSE 8787
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@@ -192,7 +197,10 @@ notebooks, with no conversion, adding javascript Reveal.js:
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```bash
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# Add Live slideshows with RISE
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RUN conda install -c damianavila82 rise
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RUN conda install --quiet --yes -c damianavila82 rise && \
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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Credit: [Paolo D.](https://github.com/pdonorio) based on
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@@ -204,11 +212,16 @@ You need to install conda's gcc for Python xgboost to work properly. Otherwise,
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exception about libgomp.so.1 missing GOMP_4.0.
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```bash
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%%bash
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conda install -y gcc
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pip install xgboost
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conda install --quiet --yes gcc && \
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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import xgboost
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pip install --quiet --no-cache-dir xgboost && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# run "import xgboost" in python
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```
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## Running behind a nginx proxy
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@@ -308,7 +321,9 @@ version in the Hub itself.
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```dockerfile
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FROM jupyter/base-notebook:33add21fab64
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RUN pip install jupyterhub==0.8.0b1
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RUN pip install --quiet --no-cache-dir jupyterhub==1.4.1 && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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Credit: [MinRK](https://github.com/jupyter/docker-stacks/issues/423#issuecomment-322767742)
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@@ -444,9 +459,11 @@ USER $NB_USER
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# - Dashboards
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# - PyDoop
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# - PyHive
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RUN pip install jupyter_dashboards faker && \
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RUN pip install --quiet --no-cache-dir jupyter_dashboards faker && \
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jupyter dashboards quick-setup --sys-prefix && \
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pip2 install pyhive pydoop thrift sasl thrift_sasl faker
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pip2 install --quiet --no-cache-dir pyhive pydoop thrift sasl thrift_sasl faker && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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USER root
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# Ensure we overwrite the kernel config so that toree connects to cluster
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@@ -488,10 +505,12 @@ FROM jupyter/minimal-notebook:latest
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USER $NB_USER
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RUN pip install jupyter_contrib_nbextensions && \
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RUN pip install --quiet --no-cache-dir jupyter_contrib_nbextensions && \
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jupyter contrib nbextension install --user && \
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# can modify or enable additional extensions here
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jupyter nbextension enable spellchecker/main --user
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jupyter nbextension enable spellchecker/main --user && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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Ref: <https://github.com/jupyter/docker-stacks/issues/675>
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@@ -513,7 +532,9 @@ RUN apt-get update --yes && \
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USER $NB_UID
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RUN pip install --quiet --no-cache-dir auto-sklearn
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RUN pip install --quiet --no-cache-dir auto-sklearn && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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```
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## Enable Delta Lake in Spark notebooks
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