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Fix more grammar issues

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This commit is contained in:
Ayaz Salikhov
2023-11-19 12:16:19 +01:00
parent d03229331a
commit d8c60bc42c
38 changed files with 85 additions and 88 deletions
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2
.github/ISSUE_TEMPLATE/feature_request.yml vendored
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@@ -52,7 +52,7 @@ body:
Example:
- Altair is a declarative statistical visualization library for Python, based on Vega and Vega-Lite, and the source is available on GitHub.
- With Altair, you can spend more time understanding your data and its meaning.
- Altair's API is simple, friendly and consistent and built on top of the powerful Vega-Lite visualization grammar.
- Altair's API is simple, friendly, and consistent and built on top of the powerful Vega-Lite visualization grammar.
- This elegant simplicity produces beautiful and effective visualizations with a minimal amount of code.
validations:
required: true

2
.github/workflows/docker-tag-push.yml vendored
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@@ -1,4 +1,4 @@
name: Download a Docker image and its tags from GitHub artifacts, apply them and push the image to the Registry
name: Download a Docker image and its tags from GitHub artifacts, apply them, and push the image to the Registry
env:
REGISTRY: quay.io

2
Makefile
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@@ -102,7 +102,7 @@ push-all: $(foreach I, $(ALL_IMAGES), push/$(I)) ## push all tagged images
run-shell/%: ## run a bash in interactive mode in a stack
docker run -it --rm "$(REGISTRY)/$(OWNER)/$(notdir $@)" $(SHELL)
run-sudo-shell/%: ## run a bash in interactive mode as root in a stack
run-sudo-shell/%: ## run bash in interactive mode as root in a stack
docker run -it --rm --user root "$(REGISTRY)/$(OWNER)/$(notdir $@)" $(SHELL)

9
README.md
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@@ -20,8 +20,7 @@ You can use a stack image to do any of the following (and more):
You can try a [relatively recent build of the quay.io/jupyter/base-notebook image on mybinder.org](https://mybinder.org/v2/gh/jupyter/docker-stacks/main?urlpath=lab/tree/README.ipynb)
by simply clicking the preceding link.
Otherwise, the examples below may help you get started if you [have Docker installed](https://docs.docker.com/get-docker/),
know [which Docker image](https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html) you want to use
and want to launch a single Jupyter Application in a container.
know [which Docker image](https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html) you want to use, and want to launch a single Jupyter Application in a container.
The [User Guide on ReadTheDocs](https://jupyter-docker-stacks.readthedocs.io/en/latest/) describes additional uses and features in detail.
@@ -44,8 +43,8 @@ You can modify the port on which the container's port is exposed by [changing th
Visiting `http://<hostname>:10000/?token=<token>` in a browser loads JupyterLab,
where:
- `hostname` is the name of the computer running Docker
- `token` is the secret token printed in the console.
- The `hostname` is the name of the computer running Docker
- The `token` is the secret token printed in the console.
The container remains intact for restart after the Server exits.
@@ -127,6 +126,6 @@ for information about how to contribute recipes, features, tests, and community-
- [jupyter/repo2docker](https://github.com/jupyterhub/repo2docker) -
Turn git repositories into Jupyter-enabled Docker Images
- [openshift/source-to-image](https://github.com/openshift/source-to-image) -
A tool for building artifacts from source and injecting them into docker images
A tool for building artifacts from source code and injecting them into docker images
- [jupyter-on-openshift/jupyter-notebooks](https://github.com/jupyter-on-openshift/jupyter-notebooks) -
OpenShift compatible S2I builder for basic notebook images

2
docs/conf.py
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@@ -29,7 +29,7 @@ language = "en"
html_theme = "alabaster"
html_static_path = ["_static"]
# File above was generated using sphinx 6.2.1 with this command:
# The file above was generated using sphinx 6.2.1 with this command:
# sphinx-quickstart --project "docker-stacks" --author "Project Jupyter" -v "latest" -r "latest" -l en --no-sep --no-makefile --no-batchfile
# These are custom options for this project

4
docs/contributing/stacks.md
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@@ -100,12 +100,12 @@ you merge a GitHub pull request to the main branch of your project.
2. Create a new repository - make sure to use the correct namespace (account or organization).
Enter the name of the image matching the one you entered when prompted with `stack_name` by the cookiecutter.
![Docker Hub - Create Repository page with the name field set to "My specialized jupyter stack"](../_static/contributing/stacks/docker-repo-name.png)
![Docker Hub - 'Create repository' page with the name field set to "My specialized jupyter stack"](../_static/contributing/stacks/docker-repo-name.png)
3. Enter a description for your image.
4. Click on your avatar in the top-right corner and select Account Settings.
![Docker Hub page zoomed into the user's settings and accounts menu](../_static/contributing/stacks/docker-user-dropdown.png)
![The Docker Hub page zoomed into the user's settings and accounts menu](../_static/contributing/stacks/docker-user-dropdown.png)
5. Click on **Security** and then click on the **New Access Token** button.

2
docs/contributing/tests.md
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@@ -22,7 +22,7 @@ defined in the [conftest.py](https://github.com/jupyter/docker-stacks/blob/main/
## Unit tests
You can add a unit test if you want to run a python script in one of our images.
You can add a unit test if you want to run a Python script in one of our images.
You should create a `tests/<somestack>/units/` directory, if it doesn't already exist, and put your file there.
Files in this folder will be executed in the container when tests are run.
You can see an [example for the TensorFlow package here](https://github.com/jupyter/docker-stacks/blob/HEAD/tests/tensorflow-notebook/units/unit_tensorflow.py).

8
docs/maintaining/new-images-and-packages-policy.md
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@@ -26,10 +26,10 @@ Here is a non-exhaustive list of things we do care about:
- Does the package open additional ports, or add new web endpoints, that could be exploited?
With all this in mind, we have a voting group, that consists of
[mathbunnyru](https://github.com/mathbunnyru),
[consideRatio](https://github.com/consideRatio),
[yuvipanda](https://github.com/yuvipanda) and
[manics](https://github.com/manics).
[@mathbunnyru](https://github.com/mathbunnyru),
[@consideRatio](https://github.com/consideRatio),
[@yuvipanda](https://github.com/yuvipanda), and
[@manics](https://github.com/manics).
This voting group is responsible for accepting or declining new packages and stacks.
The change is accepted, if there are **at least 2 positive votes**.

2
docs/maintaining/tasks.md
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@@ -33,7 +33,7 @@ We are waiting for the first point release of the new LTS Ubuntu before updating
Other images are directly or indirectly inherited from `docker-stacks-foundation`.
We rebuild our images automatically each week, which means they frequently receive updates.
When there's a security fix in the Ubuntu base image, it's a good idea to manually trigger images rebuild
When there's a security fix in the Ubuntu base image, it's a good idea to manually trigger the rebuild of images
[from the GitHub actions workflow UI](https://github.com/jupyter/docker-stacks/actions/workflows/docker.yml).
Pushing the `Run Workflow` button will trigger this process.

2
docs/using/common.md
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@@ -233,7 +233,7 @@ This script is handy when you derive a new Dockerfile from this image and instal
### Others
You can bypass the provided scripts and specify an arbitrary start command.
If you do, keep in mind that features supported by the `start.sh` script and its kin will not function (e.g., `GRANT_SUDO`).
If you do, keep in mind that features, supported by the `start.sh` script and its kin, will not function (e.g., `GRANT_SUDO`).
## Conda Environments

4
docs/using/recipe_code/custom_environment.dockerfile
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@@ -1,6 +1,6 @@
FROM quay.io/jupyter/base-notebook
# Name your environment and choose the python version
# Name your environment and choose the Python version
ARG env_name=python310
ARG py_ver=3.10
@@ -40,5 +40,5 @@ RUN activate_custom_env_script=/usr/local/bin/before-notebook.d/activate_custom_
USER ${NB_UID}
# Making this environment default in Terminal
# You can comment this line to keep the default environment in Terminal
# You can comment this line to keep the default environment in a Terminal
RUN echo "conda activate ${env_name}" >> "${HOME}/.bashrc"

4
docs/using/recipe_code/oracledb.dockerfile
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@@ -15,7 +15,7 @@ ARG INSTANTCLIENT_MAJOR_VERSION=21
ARG INSTANTCLIENT_VERSION=${INSTANTCLIENT_MAJOR_VERSION}.11.0.0.0-1
ARG INSTANTCLIENT_URL=https://download.oracle.com/otn_software/linux/instantclient/2111000
# Then install Oracle SQL Instant client, SQL+Plus, tools and JDBC.
# Then install Oracle SQL Instant client, SQL+Plus, tools, and JDBC.
# Note: You may need to change the URL to a newer version.
# See: https://www.oracle.com/es/database/technologies/instant-client/linux-x86-64-downloads.html
RUN mkdir "/opt/oracle"
@@ -39,7 +39,7 @@ RUN echo "ORACLE_HOME=/usr/lib/oracle/${INSTANTCLIENT_MAJOR_VERSION}/client64" >
echo "export PATH" >> "${HOME}/.bashrc" && \
echo "export LD_LIBRARY_PATH" >> "${HOME}/.bashrc"
# Add credentials for /redacted/ using Oracle Db.
# Add credentials for /redacted/ using Oracle DB.
WORKDIR /usr/lib/oracle/${INSTANTCLIENT_MAJOR_VERSION}/client64/lib/network/admin/
# Add a wildcard `[]` on the last letter of the filename to avoid throwing an error if the file does not exist.
# See: https://stackoverflow.com/questions/31528384/conditional-copy-add-in-dockerfile

8
docs/using/recipes.md
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@@ -132,7 +132,7 @@ Sometimes it is helpful to run the Jupyter instance behind an nginx proxy, for e
and want nginx to help improve server performance in managing the connections
Here is a [quick example of NGINX configuration](https://gist.github.com/cboettig/8643341bd3c93b62b5c2) to get started.
You'll need a server, a `.crt` and `.key` file for your server, and `docker` & `docker-compose` installed.
You'll need a server, a `.crt`, and a `.key` file for your server, and `docker` & `docker-compose` installed.
Then download the files at that gist and run `docker-compose up` to test it out.
Customize the `nginx.conf` file to set the desired paths and add other services.
@@ -506,9 +506,9 @@ The following recipe demonstrates how to add functionality to read from and writ
You can now use `pyodbc` and `sqlalchemy` to interact with the database.
Pre-built images are hosted in the [realiserad/jupyter-docker-mssql](https://github.com/Realiserad/jupyter-docker-mssql) repository.
Pre-built images are hosted in the [Realiserad/jupyter-docker-mssql](https://github.com/Realiserad/jupyter-docker-mssql) repository.
## Add Oracle SQL Instant client, SQL\*Plus and other tools (Version 21.x)
## Add Oracle SQL Instant client, SQL\*Plus, and other tools (Version 21.x)
```{note}
This recipe only works for x86_64 architecture.
@@ -520,7 +520,7 @@ This recipe installs version `21.11.0.0.0`.
Nonetheless, go to the [Oracle Instant Client Download page](https://www.oracle.com/es/database/technologies/instant-client/linux-x86-64-downloads.html) for the complete list of versions available.
You may need to perform different steps for older versions;
the may be explained on the "Installation instructions" section of the Downloads page.
they may be explained in the "Installation instructions" section of the Downloads page.
```{literalinclude} recipe_code/oracledb.dockerfile
:language: docker

4
docs/using/running.md
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@@ -170,11 +170,11 @@ Any other changes made in the container will be lost.
## Using Binder
[Binder](https://mybinder.org/) is a service that allows you to create and share custom computing environments for projects in version control.
A [Binder](https://mybinder.org/) is a service that allows you to create and share custom computing environments for projects in version control.
You can use any of the Jupyter Docker Stacks images as a basis for a Binder-compatible Dockerfile.
See the
[docker-stacks example](https://mybinder.readthedocs.io/en/latest/examples/sample_repos.html#using-a-docker-image-from-the-jupyter-docker-stacks-repository) and
[Using a Dockerfile](https://mybinder.readthedocs.io/en/latest/tutorials/dockerfile.html) sections in the
[Using a Dockerfile](https://mybinder.readthedocs.io/en/latest/tutorials/dockerfile.html) section in the
[Binder documentation](https://mybinder.readthedocs.io/en/latest/index.html) for instructions.
## Using JupyterHub

8
docs/using/specifics.md
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@@ -14,7 +14,7 @@ This page provides details about features specific to one or more images.
Every new spark context that is created is put onto an incrementing port (i.e. 4040, 4041, 4042, etc.), and it might be necessary to open multiple ports.
```
For example: `docker run --detach -p 8888:8888 -p 4040:4040 -p 4041:4041 quay.io/jupyter/pyspark-notebook`.
For example, `docker run --detach -p 8888:8888 -p 4040:4040 -p 4041:4041 quay.io/jupyter/pyspark-notebook`.
#### IPython low-level output capture and forward
@@ -53,7 +53,7 @@ You can build a `pyspark-notebook` image with a different `Spark` version by ove
- This version needs to match the version supported by the Spark distribution used above.
- See [Spark Overview](https://spark.apache.org/docs/latest/#downloading) and [Ubuntu packages](https://packages.ubuntu.com/search?keywords=openjdk).
- Starting with _Spark >= 3.2_, the distribution file might contain Scala version.
- Starting with _Spark >= 3.2_, the distribution file might contain the Scala version.
For example, here is how to build a `pyspark-notebook` image with Spark `3.2.0`, Hadoop `3.2`, and OpenJDK `11`.
@@ -161,7 +161,7 @@ Connection to Spark Cluster on **[Standalone Mode](https://spark.apache.org/docs
0. Verify that the docker image (check the Dockerfile) and the Spark Cluster, which is being
deployed, run the same version of Spark.
1. [Deploy Spark in Standalone Mode](https://spark.apache.org/docs/latest/spark-standalone.html).
2. Run the Docker container with `--net=host` in a location that is network addressable by all of
2. Run the Docker container with `--net=host` in a location that is network-addressable by all of
your Spark workers.
(This is a [Spark networking requirement](https://spark.apache.org/docs/latest/cluster-overview.html#components).)
@@ -174,7 +174,7 @@ Connection to Spark Cluster on **[Standalone Mode](https://spark.apache.org/docs
##### Standalone Mode in Python
The **same Python version** needs to be used on the notebook (where the driver is located) and on the Spark workers.
The python version used at the driver and worker side can be adjusted by setting the environment variables `PYSPARK_PYTHON` and/or `PYSPARK_DRIVER_PYTHON`,
The Python version used on the driver and worker side can be adjusted by setting the environment variables `PYSPARK_PYTHON` and/or `PYSPARK_DRIVER_PYTHON`,
see [Spark Configuration][spark-conf] for more information.
```python

8
images/base-notebook/Dockerfile
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@@ -13,17 +13,17 @@ SHELL ["/bin/bash", "-o", "pipefail", "-c"]
USER root
# Install all OS dependencies for Server that starts but lacks all
# Install all OS dependencies for the Server that starts but lacks all
# features (e.g., download as all possible file formats)
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-liberation \
# - pandoc is used to convert notebooks to html files
# it's not present in aarch64 ubuntu image, so we install it here
# it's not present in the aarch64 Ubuntu image, so we install it here
pandoc \
# - run-one - a wrapper script that runs no more
# than one unique instance of some command with a unique set of arguments,
# we use `run-one-constantly` to support `RESTARTABLE` option
# we use `run-one-constantly` to support the `RESTARTABLE` option
run-one && \
apt-get clean && rm -rf /var/lib/apt/lists/*
@@ -64,7 +64,7 @@ USER root
RUN fix-permissions /etc/jupyter/
# HEALTHCHECK documentation: https://docs.docker.com/engine/reference/builder/#healthcheck
# This healtcheck works well for `lab`, `notebook`, `nbclassic`, `server` and `retro` jupyter commands
# This healtcheck works well for `lab`, `notebook`, `nbclassic`, `server`, and `retro` jupyter commands
# https://github.com/jupyter/docker-stacks/issues/915#issuecomment-1068528799
HEALTHCHECK --interval=5s --timeout=3s --start-period=5s --retries=3 \
CMD /etc/jupyter/docker_healthcheck.py || exit 1

2
images/base-notebook/docker_healthcheck.py
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@@ -7,7 +7,7 @@ from pathlib import Path
import requests
# A number of operations below deliberately don't check for possible errors
# Several operations below deliberately don't check for possible errors
# As this is a healthcheck, it should succeed or raise an exception on error
runtime_dir = Path("/home/") / os.environ["NB_USER"] / ".local/share/jupyter/runtime/"

2
images/base-notebook/jupyter_server_config.py
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@@ -34,7 +34,7 @@ if "GEN_CERT" in os.environ:
if not cnf_file.exists():
cnf_file.write_text(OPENSSL_CONFIG)
# Generate a certificate if one doesn't exist on disk
# Generate a certificate if one doesn't exist on a disk
subprocess.check_call(
[
"openssl",

12
images/docker-stacks-foundation/Dockerfile
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@@ -18,12 +18,12 @@ SHELL ["/bin/bash", "-o", "pipefail", "-c"]
USER root
# Install all OS dependencies for Server that starts
# Install all OS dependencies for the Server that starts
# but lacks all features (e.g., download as all possible file formats)
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update --yes && \
# - apt-get upgrade is run to patch known vulnerabilities in apt-get packages as
# the ubuntu base image is rebuilt too seldom sometimes (less than once a month)
# - `apt-get upgrade` is run to patch known vulnerabilities in apt-get packages as
# the Ubuntu base image is rebuilt too seldom sometimes (less than once a month)
apt-get upgrade --yes && \
apt-get install --yes --no-install-recommends \
# - bzip2 is necessary to extract the micromamba executable.
@@ -76,19 +76,19 @@ RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
USER ${NB_UID}
# Pin python version here, or set it to "default"
# Pin Python version here, or set it to "default"
ARG PYTHON_VERSION=3.11
# Setup work directory for backward-compatibility
RUN mkdir "/home/${NB_USER}/work" && \
fix-permissions "/home/${NB_USER}"
# Download and install Micromamba, and initialize Conda prefix.
# Download and install Micromamba, and initialize the Conda prefix.
# <https://github.com/mamba-org/mamba#micromamba>
# Similar projects using Micromamba:
# - Micromamba-Docker: <https://github.com/mamba-org/micromamba-docker>
# - repo2docker: <https://github.com/jupyterhub/repo2docker>
# Install Python, Mamba and jupyter_core
# Install Python, Mamba, and jupyter_core
# Cleanup temporary files and remove Micromamba
# Correct permissions
# Do all this in a single RUN command to avoid duplicating all of the

14
images/docker-stacks-foundation/fix-permissions
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@@ -1,16 +1,14 @@
#!/bin/bash
# set permissions on a directory
# after any installation, if a directory needs to be (human) user-writable,
# run this script on it.
# It will make everything in the directory owned by the group ${NB_GID}
# and writable by that group.
# Set permissions on a directory
# After any installation, if a directory needs to be (human) user-writable, run this script on it.
# It will make everything in the directory owned by the group ${NB_GID} and writable by that group.
# Deployments that want to set a specific user id can preserve permissions
# by adding the `--group-add users` line to `docker run`.
# uses find to avoid touching files that already have the right permissions,
# which would cause massive image explosion
# Uses find to avoid touching files that already have the right permissions,
# which would cause a massive image explosion
# right permissions are:
# Right permissions are:
# group=${NB_GID}
# AND permissions include group rwX (directory-execute)
# AND directories have setuid,setgid bits set

14
images/docker-stacks-foundation/start.sh
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@@ -51,10 +51,10 @@ if [ "$(id -u)" == 0 ] ; then
# - NB_GROUP: a group name we want for the group
# - GRANT_SUDO: a boolean ("1" or "yes") to grant the user sudo rights
# - CHOWN_HOME: a boolean ("1" or "yes") to chown the user's home folder
# - CHOWN_EXTRA: a comma separated list of paths to chown
# - CHOWN_EXTRA: a comma-separated list of paths to chown
# - CHOWN_HOME_OPTS / CHOWN_EXTRA_OPTS: arguments to the chown commands
# Refit the jovyan user to the desired the user (NB_USER)
# Refit the jovyan user to the desired user (NB_USER)
if id jovyan &> /dev/null; then
if ! usermod --home "/home/${NB_USER}" --login "${NB_USER}" jovyan 2>&1 | grep "no changes" > /dev/null; then
_log "Updated the jovyan user:"
@@ -78,7 +78,7 @@ if [ "$(id -u)" == 0 ] ; then
useradd --no-log-init --home "/home/${NB_USER}" --shell /bin/bash --uid "${NB_UID}" --gid "${NB_GID}" --groups 100 "${NB_USER}"
fi
# Move or symlink the jovyan home directory to the desired users home
# Move or symlink the jovyan home directory to the desired user's home
# directory if it doesn't already exist, and update the current working
# directory to the new location if needed.
if [[ "${NB_USER}" != "jovyan" ]]; then
@@ -106,7 +106,7 @@ if [ "$(id -u)" == 0 ] ; then
fi
fi
# Optionally ensure the desired user get filesystem ownership of it's home
# Optionally ensure the desired user gets filesystem ownership of its home
# folder and/or additional folders
if [[ "${CHOWN_HOME}" == "1" || "${CHOWN_HOME}" == "yes" ]]; then
_log "Ensuring /home/${NB_USER} is owned by ${NB_UID}:${NB_GID} ${CHOWN_HOME_OPTS:+(chown options: ${CHOWN_HOME_OPTS})}"
@@ -121,7 +121,7 @@ if [ "$(id -u)" == 0 ] ; then
done
fi
# Update potentially outdated environment variables since image build
# Update potentially outdated environment variables since the image build
export XDG_CACHE_HOME="/home/${NB_USER}/.cache"
# Prepend ${CONDA_DIR}/bin to sudo secure_path
@@ -163,7 +163,7 @@ if [ "$(id -u)" == 0 ] ; then
# - We use the `--set-home` flag to set the HOME variable appropriately.
#
# - To reduce the default list of variables deleted by sudo, we could have
# used `env_delete` from /etc/sudoers. It has higher priority than the
# used `env_delete` from /etc/sudoers. It has a higher priority than the
# `--preserve-env` flag and the `env_keep` configuration.
#
# - We preserve LD_LIBRARY_PATH, PATH and PYTHONPATH explicitly. Note however that sudo
@@ -186,7 +186,7 @@ else
# Attempt to ensure the user uid we currently run as has a named entry in
# the /etc/passwd file, as it avoids software crashing on hard assumptions
# on such entry. Writing to the /etc/passwd was allowed for the root group
# from the Dockerfile during build.
# from the Dockerfile during the build.
#
# ref: https://github.com/jupyter/docker-stacks/issues/552
if ! whoami &> /dev/null; then

4
images/minimal-notebook/Dockerfile
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@@ -13,7 +13,7 @@ SHELL ["/bin/bash", "-o", "pipefail", "-c"]
USER root
# Install all OS dependencies for fully functional Server
# Install all OS dependencies for a fully functional Server
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
# Common useful utilities
@@ -43,7 +43,7 @@ RUN update-alternatives --install /usr/bin/nano nano /bin/nano-tiny 10
# Switch back to jovyan to avoid accidental container runs as root
USER ${NB_UID}
# Add R mimetype option to specify how the plot returns from R to the browser
# Add an R mimetype option to specify how the plot returns from R to the browser
COPY --chown=${NB_UID}:${NB_GID} Rprofile.site /opt/conda/lib/R/etc/
# Add setup scripts that may be used by downstream images or inherited images

2
images/minimal-notebook/setup-scripts/setup-julia-packages.bash
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@@ -1,7 +1,7 @@
#!/bin/bash
set -exuo pipefail
# Requirements:
# - Run as non-root user
# - Run as a non-root user
# - The JULIA_PKGDIR environment variable is set
# - Julia is already set up, with the setup-julia.bash command

2
images/pyspark-notebook/Dockerfile
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@@ -35,7 +35,7 @@ RUN apt-get update --yes && \
WORKDIR /tmp
# You need to use https://archive.apache.org/dist/ website if you want to download old Spark versions
# But it seems to be slower, that's why we use recommended site for download
# But it seems to be slower, that's why we use the recommended site for download
RUN if [ -z "${scala_version}" ]; then \
curl --progress-bar --location --output "spark.tgz" \
"https://dlcdn.apache.org/spark/spark-${APACHE_SPARK_VERSION}/spark-${APACHE_SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz"; \

2
images/scipy-notebook/Dockerfile
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@@ -66,7 +66,7 @@ RUN mamba install --yes \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# Install facets which does not have a pip or conda package at the moment
# Install facets package which does not have a `pip` or `conda-forge` package at the moment
WORKDIR /tmp
RUN git clone https://github.com/PAIR-code/facets && \
jupyter nbclassic-extension install facets/facets-dist/ --sys-prefix && \

2
tagging/README.md
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@@ -84,7 +84,7 @@ class SHATagger(TaggerInterface):
### Manifest
`ManifestHeader` is a build manifest header.
It contains information about `Build datetime`, `Docker image size`, and `Git commit` info.
It contains the following sections: `Build timestamp`, `Docker image size`, and `Git commit` info.
All the other manifest classes are inherited from `ManifestInterface`:

2
tagging/manifests.py
View File

@@ -49,7 +49,7 @@ class ManifestHeader:
## Build Info
- Build datetime: {build_timestamp}
- Build timestamp: {build_timestamp}
- Docker image: `{registry}/{owner}/{short_image_name}:{commit_hash_tag}`
- Docker image size: {image_size}
- Git commit SHA: [{commit_hash}](https://github.com/jupyter/docker-stacks/commit/{commit_hash})

2
tagging/update_wiki.py
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@@ -51,7 +51,7 @@ def update_monthly_wiki_page(
def get_manifest_timestamp(manifest_file: Path) -> str:
file_content = manifest_file.read_text()
pos = file_content.find("Build datetime: ")
pos = file_content.find("Build timestamp: ")
return file_content[pos + 16 : pos + 36]

2
tagging/write_manifest.py
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@@ -16,7 +16,7 @@ from tagging.manifests import ManifestHeader, ManifestInterface
LOGGER = logging.getLogger(__name__)
# This would actually be manifest creation timestamp
# We use a manifest creation timestamp, which happens right after a build
BUILD_TIMESTAMP = datetime.datetime.utcnow().isoformat()[:-7] + "Z"
MARKDOWN_LINE_BREAK = "<br />"

2
tests/base-notebook/test_container_options.py
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@@ -42,7 +42,7 @@ def test_nb_user_change(container: TrackedContainer) -> None:
# Use sleep, not wait, because the container sleeps forever.
time.sleep(1)
LOGGER.info(
f"Checking if home folder of {nb_user} contains the hidden '.jupyter' folder with appropriate permissions ..."
f"Checking if a home folder of {nb_user} contains the hidden '.jupyter' folder with appropriate permissions ..."
)
command = f'stat -c "%F %U %G" /home/{nb_user}/.jupyter'
expected_output = f"directory {nb_user} users"

6
tests/docker-stacks-foundation/test_packages.py
View File

@@ -15,8 +15,8 @@ The goal is to detect import errors that can be caused by incompatibilities betw
This module checks dynamically, through the `CondaPackageHelper`,
only the requested packages i.e. packages requested by `mamba install` in the `Dockerfile`s.
This means that it does not check dependencies.
This choice is a tradeoff to cover the main requirements while achieving reasonable test duration.
However it could be easily changed (or completed) to cover also dependencies.
This choice is a tradeoff to cover the main requirements while achieving a reasonable test duration.
However, it could be easily changed (or completed) to cover dependencies as well.
Use `package_helper.installed_packages()` instead of `package_helper.requested_packages()`.
Example:
@@ -145,7 +145,7 @@ def _check_import_packages(
"""Test if packages can be imported
Note: using a list of packages instead of a fixture for the list of packages
since pytest prevents use of multiple yields
since pytest prevents the use of multiple yields
"""
failures = {}
LOGGER.info("Testing the import of packages ...")

2
tests/docker-stacks-foundation/test_run_hooks.py
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@@ -83,7 +83,7 @@ def run_source_in_dir(
cont_data_dir = "/home/jovyan/data"
# https://forums.docker.com/t/all-files-appear-as-executable-in-file-paths-using-bind-mount/99921
# Unfortunately, Docker treats all files in mounter dir as executable files
# So we make a copy of mounted dir inside a container
# So we make a copy of the mounted dir inside a container
command = (
"cp -r /home/jovyan/data/ /home/jovyan/data-copy/ &&"
"source /usr/local/bin/run-hooks.sh /home/jovyan/data-copy/" + command_suffix

8
tests/docker-stacks-foundation/test_user_options.py
View File

@@ -74,7 +74,7 @@ def test_nb_user_change(container: TrackedContainer) -> None:
), f"Bad owner for the {nb_user} home folder {output}, expected {expected_output}"
LOGGER.info(
f"Checking if home folder of {nb_user} contains the 'work' folder with appropriate permissions ..."
f"Checking if a home folder of {nb_user} contains the 'work' folder with appropriate permissions ..."
)
command = f'stat -c "%F %U %G" /home/{nb_user}/work'
expected_output = f"directory {nb_user} users"
@@ -86,7 +86,7 @@ def test_nb_user_change(container: TrackedContainer) -> None:
def test_chown_extra(container: TrackedContainer) -> None:
"""Container should change the UID/GID of a comma separated
"""Container should change the UID/GID of a comma-separated
CHOWN_EXTRA list of folders."""
logs = container.run_and_wait(
timeout=120, # chown is slow so give it some time
@@ -184,7 +184,7 @@ def test_group_add(container: TrackedContainer) -> None:
def test_set_uid(container: TrackedContainer) -> None:
"""Container should run with the specified uid and NB_USER.
The /home/jovyan directory will not be writable since it's owned by 1000:users.
Additionally verify that "--group-add=users" is suggested in a warning to restore
Additionally, verify that "--group-add=users" is suggested in a warning to restore
write access.
"""
logs = container.run_and_wait(
@@ -270,7 +270,7 @@ def test_jupyter_env_vars_to_unset(
def test_secure_path(container: TrackedContainer, tmp_path: pathlib.Path) -> None:
"""Make sure that the sudo command has conda's python (not system's) on path.
"""Make sure that the sudo command has conda's python (not system's) on PATH.
See <https://github.com/jupyter/docker-stacks/issues/1053>.
"""
d = tmp_path / "data"

2
tests/scipy-notebook/test_cython.py
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@@ -19,7 +19,7 @@ def test_cython(container: TrackedContainer) -> None:
"start.sh",
"bash",
"-c",
# We copy our data to temporary folder to be able to modify the directory
# We copy our data to a temporary folder to be able to modify the directory
f"cp -r {cont_data_dir}/ /tmp/test/ && cd /tmp/test && python3 setup.py build_ext",
],
)

2
tests/scipy-notebook/test_matplotlib.py
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@@ -17,7 +17,7 @@ THIS_DIR = Path(__file__).parent.resolve()
(
"matplotlib_1.py",
"test.png",
"Test that matplotlib is able to plot a graph and write it as an image ...",
"Test that matplotlib can plot a graph and write it as an image ...",
),
(
"matplotlib_fonts_1.py",