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Fixes

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This commit is contained in:
Ayaz Salikhov
2021-05-22 14:01:01 +03:00
parent d65334bdfb
commit fbceaa9892
10 changed files with 34 additions and 39 deletions
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4
all-spark-notebook/Dockerfile
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@@ -12,8 +12,8 @@ ENV R_LIBS_USER $SPARK_HOME/R/lib
RUN fix-permissions $R_LIBS_USER
# R pre-requisites
RUN apt-get update && \
apt-get install -y --no-install-recommends \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-dejavu \
gfortran \
gcc && \

4
base-notebook/Dockerfile
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@@ -44,8 +44,8 @@ ARG miniforge_checksum="d4065b376f81b83cfef0c7316f97bb83337e4ae27eb988828363a578
# Install all OS dependencies for notebook server that starts but lacks all
# features (e.g., download as all possible file formats)
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get -q update && \
apt-get install -yq --no-install-recommends \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
tini \
wget \
ca-certificates \

4
datascience-notebook/Dockerfile
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@@ -19,8 +19,8 @@ ARG julia_version="1.6.0"
ARG julia_checksum="463b71dc70ca7094c0e0fd6d55d130051a7901e8dec5eb44d6002c57d1bd8585"
# R pre-requisites
RUN apt-get update && \
apt-get install -y --no-install-recommends \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-dejavu \
gfortran \
gcc && \

38
docs/using/recipes.md
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@@ -253,11 +253,10 @@ FROM $BASE_CONTAINER
USER root
# Remove the manpage blacklist, install man, install docs
RUN rm /etc/dpkg/dpkg.cfg.d/excludes \
&& apt-get update \
&& dpkg -l | grep ^ii | cut -d' ' -f3 | xargs apt-get install -yq --no-install-recommends --reinstall man \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
RUN rm /etc/dpkg/dpkg.cfg.d/excludes && \
apt-get update --yes && \
dpkg -l | grep ^ii | cut -d' ' -f3 | xargs apt-get install --yes --no-install-recommends --reinstall man && \
apt-get clean && rm -rf /var/lib/apt/lists/*
USER $NB_UID
```
@@ -280,10 +279,9 @@ For Ubuntu 18.04 (bionic) and earlier, you may also require to workaround for a
# https://git.savannah.gnu.org/cgit/man-db.git/commit/?id=8197d7824f814c5d4b992b4c8730b5b0f7ec589a
# https://launchpadlibrarian.net/435841763/man-db_2.8.5-2_2.8.6-1.diff.gz
RUN echo "MANPATH_MAP ${CONDA_DIR}/bin ${CONDA_DIR}/man" >> /etc/manpath.config \
&& echo "MANPATH_MAP ${CONDA_DIR}/bin ${CONDA_DIR}/share/man" >> /etc/manpath.config \
&& mandb
RUN echo "MANPATH_MAP ${CONDA_DIR}/bin ${CONDA_DIR}/man" >> /etc/manpath.config && \
echo "MANPATH_MAP ${CONDA_DIR}/bin ${CONDA_DIR}/share/man" >> /etc/manpath.config && \
mandb
```
Be sure to check the current base image in `base-notebook` before building.
@@ -417,21 +415,19 @@ ENV HADOOP_CONF_DIR /usr/local/hadoop-2.7.3/etc/hadoop
USER root
# Add proper open-jdk-8 not just the jre, needed for pydoop
RUN echo 'deb https://cdn-fastly.deb.debian.org/debian jessie-backports main' > /etc/apt/sources.list.d/jessie-backports.list && \
apt-get -y update && \
apt-get install --no-install-recommends -t jessie-backports -y openjdk-8-jdk && \
apt-get update --yes && \
apt-get install --yes --no-install-recommends -t jessie-backports openjdk-8-jdk && \
rm /etc/apt/sources.list.d/jessie-backports.list && \
apt-get clean && \
rm -rf /var/lib/apt/lists/ && \
apt-get clean && rm -rf /var/lib/apt/lists/* && \
# Add hadoop binaries
wget https://mirrors.ukfast.co.uk/sites/ftp.apache.org/hadoop/common/hadoop-2.7.3/hadoop-2.7.3.tar.gz && \
tar -xvf hadoop-2.7.3.tar.gz -C /usr/local && \
chown -R $NB_USER:users /usr/local/hadoop-2.7.3 && \
rm -f hadoop-2.7.3.tar.gz && \
# Install os dependencies required for pydoop, pyhive
apt-get update && \
apt-get install --no-install-recommends -y build-essential python-dev libsasl2-dev && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* && \
apt-get update --yes && \
apt-get install --yes --no-install-recommends build-essential python-dev libsasl2-dev && \
apt-get clean && rm -rf /var/lib/apt/lists/* && \
# Remove the example hadoop configs and replace
# with those for our cluster.
# Alternatively this could be mounted as a volume
@@ -521,11 +517,9 @@ FROM jupyter/scipy-notebook:latest
USER root
# autosklearn requires swig, which no other image has
RUN apt-get update && \
apt-get install -y --no-install-recommends swig && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends swig && \
apt-get clean && rm -rf /var/lib/apt/lists/*
USER $NB_UID

2
examples/docker-compose/notebook/Dockerfile
View File

@@ -7,7 +7,7 @@ FROM jupyter/minimal-notebook:55d5ca6be183
USER root
# Add permanent apt-get installs and other root commands here
# e.g., RUN apt-get install npm nodejs
# e.g., RUN apt-get install --yes --no-install-recommends npm nodejs
USER $NB_UID

2
examples/make-deploy/Dockerfile
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@@ -7,7 +7,7 @@ FROM jupyter/minimal-notebook:2d125a7161b5
USER root
# Add permanent apt-get installs and other root commands here
# e.g., RUN apt-get install npm nodejs
# e.g., RUN apt-get install --yes --no-install-recommends npm nodejs
USER $NB_UID

7
minimal-notebook/Dockerfile
View File

@@ -8,7 +8,8 @@ LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
USER root
# Install all OS dependencies for fully functional notebook server
RUN apt-get update && apt-get install -yq --no-install-recommends \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
build-essential \
vim-tiny \
git \
@@ -25,8 +26,8 @@ RUN apt-get update && apt-get install -yq --no-install-recommends \
# ----
tzdata \
unzip \
nano-tiny \
&& apt-get clean && rm -rf /var/lib/apt/lists/*
nano-tiny && \
apt-get clean && rm -rf /var/lib/apt/lists/*
# Create alternative for nano -> nano-tiny
RUN update-alternatives --install /usr/bin/nano nano /bin/nano-tiny 10

4
pyspark-notebook/Dockerfile
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@@ -21,8 +21,8 @@ ARG openjdk_version="11"
ENV APACHE_SPARK_VERSION="${spark_version}" \
HADOOP_VERSION="${hadoop_version}"
RUN apt-get -y update && \
apt-get install --no-install-recommends -y \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
"openjdk-${openjdk_version}-jre-headless" \
ca-certificates-java && \
apt-get clean && rm -rf /var/lib/apt/lists/*

4
r-notebook/Dockerfile
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@@ -8,8 +8,8 @@ LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
USER root
# R pre-requisites
RUN apt-get update && \
apt-get install -y --no-install-recommends \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends \
fonts-dejavu \
unixodbc \
unixodbc-dev \

4
scipy-notebook/Dockerfile
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@@ -8,8 +8,8 @@ LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
USER root
# ffmpeg for matplotlib anim & dvipng+cm-super for latex labels
RUN apt-get update && \
apt-get install -y --no-install-recommends ffmpeg dvipng cm-super && \
RUN apt-get update --yes && \
apt-get install --yes --no-install-recommends ffmpeg dvipng cm-super && \
apt-get clean && rm -rf /var/lib/apt/lists/*
USER $NB_UID