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400 Commits

Author SHA1 Message Date
romainx
694640df66 Fixes #1215: remove the workaround 
The ipyml package dependencies has been fixed in conda-forge. So there is no more necessary to pin jedi here, it's now managed by the upstream dependency. And it leads to the same result install jedi `0.17.2`.
 2021-01-28 14:54:36 +01:00
romainx
92289757d2 JupyterLab 3.0 and other updates 2021-01-22 09:36:22 +01:00
Romain
aec555e49b Merge pull request #1209 from romainx/feat-1207-1 
Jupyter Notebook Deprecation Notice
 2021-01-19 07:10:10 +01:00
romainx
13bf51f6a7 Fix according to the review 2021-01-18 18:02:29 +01:00
romainx
0660736ac0 Changes following the review 2021-01-18 07:43:26 +01:00
romainx
9d9d019d57 Workaround for #1215 
Also bumped some dependencies in the base image
 2021-01-17 18:03:53 +01:00
romainx
b7aad78b82 Switch to JupyterLab by default 2021-01-08 09:13:01 +01:00
Romain
628215351f Accept review suggestion with a best comment 
Co-authored-by: Peter Parente <parente@gmail.com>
 2021-01-02 19:31:05 +01:00
romainx
6ae8512231 Rollback to JupyterLab 2.2x 
Waiting for extensions compat
 2020-12-30 11:39:52 +01:00
romainx
96deb9f4d2 #1205: Manage both config files 2020-12-29 20:54:30 +01:00
romainx
9648e05b7c #1205: Fix c.ServerApp.certfile 2020-12-29 17:51:44 +01:00
romainx
c41616d7f3 #1205: Fix the configuration in jupyter_server_config.py 2020-12-29 17:44:16 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
daff4686e8 Fix .dockerignore by adding default hooks + test dirs 2020-12-20 05:47:12 +01:00
romainx
0130403d3d Bump to miniforge / conda 4.9.2 2020-12-02 10:22:27 +01:00
romainx
86523f0619 Regular update + improvements 2020-12-01 22:05:21 +01:00
Peter Parente
d53a302fbc Merge pull request #1189 from romainx/feat_miniforge 
Switch from Miniconda to Miniforge
 2020-11-29 10:13:24 -05:00
Peter Parente
6e7af7b82e Merge pull request #1186 from stevenstetzler/master 
[Bug fix] Create home directory before changing ownership
 2020-11-29 09:42:41 -05:00
romainx
5f140e6972 Bump Miniforge patch number to the latest released 
Fix the CondaPackageHelper to handle cases when conda spec is expressed with two `=` signs instead of a single one.
 2020-11-25 21:35:05 +01:00
romainx
1d2581b4f8 Split installer definition in several args 2020-11-14 18:49:08 +01:00
romainx
f9167c2619 strict channel priority is no more necessary 2020-11-14 11:56:53 +01:00
romainx
d7b51cf6b8 Add checksum in the dockerfile instead of downloading it 2020-11-13 21:40:45 +01:00
romainx
96ab5502e1 Miniconda -> Miniforge 2020-11-13 17:55:31 +01:00
Steven Stetzler
127f3bfe0b shuffle workdir option in tests 2020-11-10 21:48:08 +00:00
stevenstetzler
eb50198dfa Create home directory before changing ownership 2020-11-06 14:09:24 -08:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
Ayaz Salikhov
5b678ca407 Fix bashate style issues 2020-09-30 16:46:33 +03:00
Ayaz Salikhov
e3085ca89e Merge branch 'master' into asalikhov/py_codestyle 2020-09-28 06:37:23 +03:00
Romain
332db3db9e Merge pull request #1166 from jan-janssen/master 
Activate conda base environment by default
 2020-09-26 06:46:13 +02:00
Romain
9c97376140 Merge pull request #1159 from romainx/stack_update 
Stack update
 2020-09-26 05:46:22 +02:00
Jan Janssen
9553e22546 Update Dockerfile 2020-09-25 11:35:06 +02:00
Jan Janssen
0d5de3de64 Update Dockerfile 2020-09-25 11:34:18 +02:00
Jan Janssen
d5ade51615 Update Dockerfile 2020-09-20 13:06:33 +02:00
Jan Janssen
76fd840df4 Update Dockerfile 2020-09-20 13:04:32 +02:00
Jan Janssen
aaa10c4e88 Update Dockerfile 2020-09-20 13:02:53 +02:00
Jan Janssen
0fdbb3bef9 Update Dockerfile 2020-09-20 12:57:17 +02:00
Jan Janssen
07dcef2109 Write __conda_setup to ~/.profile 
Some conda packages rely in the `conda activate` to set the corresponding environment variables, therefore just including the `bin` directory in the `PATH` is not sufficient.
 2020-09-20 12:41:17 +02:00
John
83ec89d4bc Update Dockerfile 2020-09-19 18:59:31 +02:00
romainx
325dd5b3e2 Fix build (hope) 
- miniconda versions and arguments
- remove useless hd5 install (dependency of h5py)
- pin the version of pyarrow
 2020-09-19 17:27:47 +02:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
romainx
39dc7752e8 Fixed test test_cli_args 
Changed `""` into `''` to pass an empty token. Seems to be linked to this warning:
```
/opt/conda/lib/python3.8/site-packages/traitlets/traitlets.py:2195: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use '' instead of "''" – or use CUnicode.
```

Added debug information (ouput of the command line).
 2020-09-10 20:00:24 +02:00
Greg
e95f3c5e86 add -f option with groupadd 
Signed-off-by: Greg <werner.greg@gmail.com>
 2020-08-20 20:19:39 -04:00
Chance Zibolski
a1e40faed8 base-notebook: Update notebook to 6.1.3 and jupyterlab to 2.2.5 2020-08-20 09:22:05 -07:00
Ayaz Salikhov
530e2b3834 Merge branch 'master' into asalikhov/py_codestyle 2020-08-16 20:02:40 +03:00
Peter Parente
1031477369 [ci skip] Update READMEs visible on Docker Hub 2020-08-08 15:09:02 -04:00
Peter Parente
5758b59314 Fix SOURCE_COMMIT -> GITHUB_SHA references 2020-08-01 00:12:07 -04:00
Peter Parente
d2cb805740 Clean up hook debugs, leftovers 2020-07-30 07:50:23 -04:00
Peter Parente
0f1ebea3c7 Fix missing container wait in test 2020-07-30 07:50:16 -04:00
Peter Parente
34e73d4f6b Refactor wiki hooks for Actions 2020-07-30 07:49:00 -04:00