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Commit Graph

135 Commits

Author SHA1 Message Date
Ayaz Salikhov
0d08cc0efb Remove hooks from .dockerignore 2021-05-07 14:17:40 +03:00
Ayaz Salikhov
16ec0852c5 Merge branch 'master' into asalikhov/fix_markdown 2021-05-04 01:08:53 +03:00
Ayaz Salikhov
c2031e2a4a Fix more errors 2021-05-01 13:07:40 +03:00
Ayaz Salikhov
bf5ec600d1 Use mdlint rules [WIP] 2021-05-01 12:52:41 +03:00
Ayaz Salikhov
1839a4934d Implement RPackagesManifest 2021-04-25 12:28:29 +03:00
Ayaz Salikhov
2f8934e5ac Remove unused run_hook parts 2021-04-25 12:22:00 +03:00
Ayaz Salikhov
f52987a959 Delete run_hook parts already implemented in python 2021-04-25 11:54:46 +03:00
Ayaz Salikhov
9991d6438e Delete index update from run_hook 2021-04-24 20:38:44 +03:00
Ayaz Salikhov
95f488d0a7 Merge branch 'master' into asalikhov/python_tagging 2021-04-16 13:38:48 +03:00
romainx
565af01950 Regular update 2021-04-08 2021-04-08 06:20:32 +02:00
Ayaz Salikhov
f8d21532ee Remove docker tag from run_hook 2021-03-22 13:36:32 +03:00
romainx
d0e066e116 Regular update 2021-03-17 2021-03-17 22:13:19 +01:00
DavidSpek
66f8896f6a update r-rmarkdown to 2.7* 2021-02-24 19:41:43 +01:00
romainx
c84ea78306 Regular update 2021-02-11 19:49:03 +01:00
romainx
515ab148a6 fix-permissions in home dir for r-notebook 2021-01-22 15:47:27 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
daff4686e8 Fix .dockerignore by adding default hooks + test dirs 2020-12-20 05:47:12 +01:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
Ayaz Salikhov
5b678ca407 Fix bashate style issues 2020-09-30 16:46:33 +03:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
Peter Parente
1031477369 [ci skip] Update READMEs visible on Docker Hub 2020-08-08 15:09:02 -04:00
Peter Parente
5758b59314 Fix SOURCE_COMMIT -> GITHUB_SHA references 2020-08-01 00:12:07 -04:00
Peter Parente
34e73d4f6b Refactor wiki hooks for Actions 2020-07-30 07:49:00 -04:00
ttimbers
3748d0f8a5 merging upstream changes 2020-06-15 22:58:06 -07:00
Tiffany A. Timbers
6c8db49d8a Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:32:08 -07:00
Tiffany A. Timbers
017040d785 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:59 -07:00
Tiffany A. Timbers
bc26d1a776 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:43 -07:00
ttimbers
a883ce1794 versions and tidymodels 
- added versions to ggplot2 and sparklyr for all-spark-notebook
- added tidymodels to r-notebook and docs

closes #1102
 2020-06-05 14:41:12 -07:00
ttimbers
13059e5f06 removed plyr and reshape2 
closes #1103
 2020-06-05 14:04:36 -07:00
Tiffany A. Timbers
e47f971efd Updated to r4.0 
and packages that work with it.
 2020-06-05 13:56:54 -07:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
7b48e43b74 Fix hadolint deviations 2020-05-29 19:33:24 +02:00
Ayaz Salikhov
9096270368 Print image size in manifest 2020-05-26 15:07:25 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18 
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
 2020-04-29 09:16:28 +02:00
romainx
d458afffaf Big upgrade 
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
 2020-04-04 23:04:45 +02:00
romainx
a3aeae9721 Bump r-notebook 2020-02-23 13:28:04 +01:00
Peter Parente
171ba82a30 Fix ssh key format 
New Docker Hub UI loses newlines in the env
var settings. Loss of new lines leads ssh-add
to prompt and fail when loading the key.

Base64 encode and decode the key to workaround
the limitation.
 2020-01-29 09:37:04 -05:00
Richard Darst
8bfffcaa3f Sort package installation lines alphabetically for easier comparison 2019-08-06 10:44:10 +03:00
Richard Darst
686f9770d8 Update r-notebook package versions 2019-08-04 01:45:01 +03:00
Tiffany A. Timbers
3e91889e51 Added install of e1071 R package 
The e1071 R package is a dependency of functions within the caret package. Without it, `caret::train` (for example) cannot be run. This pull request addresses issue #889 (https://github.com/jupyter/docker-stacks/issues/889). 

note - I first tried installing e1071 in the RUN command started on line 27 but that resulted in e1071 not installing (don't know why) but adding an additional RUN command led to succesful installation... So I just went with it.
 2019-06-20 12:06:12 -07:00
echowhisky
40c5c07b0a added -f flag to all conda clean commands 
This commit adds the additional `-f` force command to all uses of `conda
clean --all` through the repo. Size should be smaller, but still testing
if anything breaks. See issue #861.
 2019-05-04 19:11:32 +00:00
echowhisky
1f8311a7aa changed -tipsy to --all -y across all files 
The last commit was only for the base-notebook's Dockerfile. For this,
all the files in the repo were grepped through and changed.
 2019-05-04 18:53:49 +00:00
Chia-liang Kao
a657b782bd Move tzdata to minimal-notebook and document it 2019-03-25 16:04:04 +08:00
Peter Parente
76853d93ed [ci skip] Escape those backticks 2019-03-16 22:38:40 -04:00
Peter Parente
4667cffc41 [ci skip] List full image name and tag 2019-03-16 22:31:10 -04:00
Peter Parente
3339b63abf [ci skip] Add row to build index after every image push 2019-03-16 22:03:59 -04:00
Peter Parente
243da296a1 [ci skip] Add language versions, conda info, fix spark info 2019-03-16 22:03:54 -04:00
Peter Parente
10c58da405 [ci skip] Add package manifest support 
Generates manifest pages and pushes them
to the docker-stacks GitHub wiki.
Does not update a global index of all builds yet.
 2019-03-15 16:08:27 -04:00
“Romain
827309ed70 r-notebook devtools install_github does not work 2019-03-08 17:26:48 +01:00