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73 Commits

Author SHA1 Message Date
romainx
565af01950 Regular update 2021-04-08 2021-04-08 06:20:32 +02:00
romainx
d0e066e116 Regular update 2021-03-17 2021-03-17 22:13:19 +01:00
DavidSpek
66f8896f6a update r-rmarkdown to 2.7* 2021-02-24 19:41:43 +01:00
romainx
c84ea78306 Regular update 2021-02-11 19:49:03 +01:00
romainx
515ab148a6 fix-permissions in home dir for r-notebook 2021-01-22 15:47:27 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
ttimbers
3748d0f8a5 merging upstream changes 2020-06-15 22:58:06 -07:00
Tiffany A. Timbers
6c8db49d8a Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:32:08 -07:00
Tiffany A. Timbers
017040d785 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:59 -07:00
Tiffany A. Timbers
bc26d1a776 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:43 -07:00
ttimbers
a883ce1794 versions and tidymodels 
- added versions to ggplot2 and sparklyr for all-spark-notebook
- added tidymodels to r-notebook and docs

closes #1102
 2020-06-05 14:41:12 -07:00
ttimbers
13059e5f06 removed plyr and reshape2 
closes #1103
 2020-06-05 14:04:36 -07:00
Tiffany A. Timbers
e47f971efd Updated to r4.0 
and packages that work with it.
 2020-06-05 13:56:54 -07:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
7b48e43b74 Fix hadolint deviations 2020-05-29 19:33:24 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18 
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
 2020-04-29 09:16:28 +02:00
romainx
d458afffaf Big upgrade 
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
 2020-04-04 23:04:45 +02:00
romainx
a3aeae9721 Bump r-notebook 2020-02-23 13:28:04 +01:00
Richard Darst
8bfffcaa3f Sort package installation lines alphabetically for easier comparison 2019-08-06 10:44:10 +03:00
Richard Darst
686f9770d8 Update r-notebook package versions 2019-08-04 01:45:01 +03:00
Tiffany A. Timbers
3e91889e51 Added install of e1071 R package 
The e1071 R package is a dependency of functions within the caret package. Without it, `caret::train` (for example) cannot be run. This pull request addresses issue #889 (https://github.com/jupyter/docker-stacks/issues/889). 

note - I first tried installing e1071 in the RUN command started on line 27 but that resulted in e1071 not installing (don't know why) but adding an additional RUN command led to succesful installation... So I just went with it.
 2019-06-20 12:06:12 -07:00
echowhisky
40c5c07b0a added -f flag to all conda clean commands 
This commit adds the additional `-f` force command to all uses of `conda
clean --all` through the repo. Size should be smaller, but still testing
if anything breaks. See issue #861.
 2019-05-04 19:11:32 +00:00
echowhisky
1f8311a7aa changed -tipsy to --all -y across all files 
The last commit was only for the base-notebook's Dockerfile. For this,
all the files in the repo were grepped through and changed.
 2019-05-04 18:53:49 +00:00
Chia-liang Kao
a657b782bd Move tzdata to minimal-notebook and document it 2019-03-25 16:04:04 +08:00
“Romain
827309ed70 r-notebook devtools install_github does not work 2019-03-08 17:26:48 +01:00
“Romain
8978d8867e devtools install_github does not work 2019-02-17 07:06:19 +01:00
heoa
9ab617f330 Support for ODBC 
I recommend to add the support for ODBC.
 2019-01-07 02:31:32 +02:00
Romain C
50a26185b9 Updated R packages to match all-spark-notebook update in PR #782 2018-12-29 22:42:17 +01:00
Tim Ryan
3fc28b67e0 Remove apt-get clean command. Unecessary on official Ubuntu images. 2018-12-17 10:40:58 -05:00
graemes
1d763bbac5 Convert FROM specification to ARG (#727) 2018-10-19 18:52:27 +01:00
Peter Parente
981f6e402d Notebook 5.4, force tornado 4.* at the outset 2018-03-19 08:41:56 -04:00
Peter Parente
0ccd8796ac Fix r-notebook notebook start 2018-03-18 21:49:41 -04:00
bclipp
e321651f36 sparklyr add to r-notebook 
sparklyr alone without any other spark package added to the install image.
 2018-03-14 11:48:43 -04:00
Jonathan Terhorst
652cd9fdb5 add r-htmltools pkg 2018-03-09 11:00:31 -05:00
Graham Dumpleton
770007bb10 Use NB_UID for USER statement in Dockerfile so deployment platform can verify that image doesn't run as root. 2018-02-15 11:11:32 +11:00
Jonathan Terhorst
9dfacf4419 Add correct command :) 2018-01-14 11:03:15 -05:00
Jonathan Terhorst
97170690c3 Update Dockerfile to install r-hexbin 
Fixes #532
 2018-01-14 10:42:36 -05:00
Alexander Treptau
4fb888122b (fix) Add tzdata as R pre-requisites. #502 2017-11-18 16:27:36 +01:00
cglewis
d91d4a8c48 MAINTAINER is deprecated, using LABEL now 2017-10-31 20:17:06 -07:00
Min RK
c6c1ce4cb0 use groups for managing write-access to files 
- any files the user should be able to write should have group `user-permissions` with `g+rwX`
- remove `chown` from start.sh because it is no longer needed
- add `fix-permissions` script for setting the user-writable permissions on a path
- user-permissions group as GID 10000 (is there a reason for it to have a different value?)
- containers can set group with `--group-add user-writable` if they want to run with a different uid/gid
  (without -u root -e NB_UID -e NB_GID, which make this unnecessary)
 2017-08-26 09:50:56 -04:00
Peter Parente
b114a06f75 Use R packages from conda-forge 2017-06-26 23:57:47 -04:00
Min RK
c6e5e289dd reduce files in home directory 
- add a few missing `--system` flags to conda config
- install default notebook config to /etc/jupyter instead of ~/.jupyter
- add a few missing `conda clean`s
 2017-05-02 13:26:35 +02:00
John Ramey
e8ee6443e2 Added Hadley Wickham's tidyverse to r-notebook 2017-02-19 17:30:29 -06:00
Peter Parente
012b408e73 Upgrade to r-base 3.3.2 
Remove pinning for plotting fix and upgrade other R packages
 2017-01-02 23:11:30 -05:00
Peter Parente
d762cb9790 Update to IRKernel 0.7 
Version 0.6 does not work after all containers rebuild
 2016-10-11 21:30:02 -05:00
Peter Parente
54552d36cf Merge pull request #278 from parente/fix-r-plotting-again 
Workaround for R plotting regression
 2016-09-14 07:10:15 -04:00
Peter Parente
0d47f10af2 Workaround for R plotting regression 
Pin r-base to 3.3.1-1 (3.3.1-3 breaks it)
 2016-09-09 23:40:23 -04:00