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107 Commits

Author SHA1 Message Date
Romain
5ee27aa513 Merge pull request #1178 from das-g/copy-with-chown-in-recipes-dockerfiles 
recipes: use COPY with --chown for jovyan's files
 2020-10-24 22:17:03 +02:00
romainx
f055648e44 Rollback changes made on editors 2020-10-21 08:23:49 +02:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
Raphael Das Gupta
d6da5aef56 recipes: use COPY with --chown for jovyan's files 
By default, Dockerfile's COPY creates files and directories with UID and
GID 0. (See https://docs.docker.com/engine/reference/builder/#copy)
When we put them in jovyan's $HOME or want jovyan to manipulate these
files, they should be owned by jovyan instead.

Specifically
https://jupyter-docker-stacks.readthedocs.io/en/latest/using/recipes.html#add-a-python-3-x-environment
failed with a "permission denied" error when the code for using an
environment.yml file was uncommented. I assume some of the other recipes
might have failed like that, too, but I didn't test them.
 2020-10-09 19:18:11 +02:00
romainx
8201c14ef4 nano -> nano-tiny 2020-09-30 06:45:26 +02:00
romainx
8cd98a1bff Fixes #1161 
Added a note in the documentation to indicate that the build will only work with Spark current versions.
 2020-09-17 04:50:11 +02:00
romainx
8669d6e79b Resolves #1131: Allow alternative Spark version 
Allow to build `pyspark-notebook` image with an alternative Spark version.

- Define arguments for Spark installation
- Add a note in "Image Specifics" explaining how to build an image with an alternative Spark version
- Remove Toree documentation from "Image Specifics" since its support has been droped in #1115
 2020-08-15 20:19:35 +02:00
Peter Parente
95f792c690 Travis -> GitHub Actions in doc 2020-08-07 22:52:12 -04:00
Tiffany A. Timbers
1fa0d4824c Merge branch 'master' into r4.0 2020-06-17 20:09:25 -07:00
ttimbers
a883ce1794 versions and tidymodels 
- added versions to ggplot2 and sparklyr for all-spark-notebook
- added tidymodels to r-notebook and docs

closes #1102
 2020-06-05 14:41:12 -07:00
ttimbers
13059e5f06 removed plyr and reshape2 
closes #1103
 2020-06-05 14:04:36 -07:00
Peter Parente
1c204509e1 Merge branch 'master' into asalikhov/ubuntu_focal 2020-05-29 09:12:34 -04:00
Peter Parente
40d2312b1e Merge branch 'master' into asalikhov/improve_docs 2020-05-29 09:10:49 -04:00
Romain
c83024c950 Add spark notebook tests and change examples 
* Test added for all kernels
* Same examples as provided in the documentation (`specifics.md`)
* Used the same use case for all examples: sum of the first 100 whole numbers

Note: I've not automatically tested `local_sparklyr.ipynb` since it creates by default the `metastore_db` dir and the `derby.log` file in the working directory. Since I mount it in `RO` it's not working. I'm struggling to set it elsewhere...
 2020-05-29 06:54:46 +02:00
Romain
36dc621f97 typo 2020-05-28 12:34:50 +02:00
Romain
3277f48c23 Follow-on PR #911: Spark documentation rework 
Some changes to the Spark documentation
for local and standalone use cases with the following drivers

* Simplify some of them (removing options, etc.)
* Use the same code as much as possible in each example to be consistent (only kept R different from the others)
* Add Sparklyr as an option for R
* Add some notes about prerequisites (same version of Python, R installed on workers)
 2020-05-28 12:26:09 +02:00
Ayaz Salikhov
b6d96d1ca2 Improve documentation 2020-05-28 11:47:48 +02:00
Ayaz Salikhov
a2086ce626 Start using Ubuntu 20.04 (focal) 2020-05-28 10:42:03 +02:00
Travis CI
44a7d70805 Remove mesos lib from pyspark-notebook 2020-05-24 14:18:47 -04:00
Peter Parente
11d87b2281 Merge branch 'master' into #1077 2020-05-20 23:23:44 -04:00
Ian Coffey
e243eeb0f6 add --no-cache-dir to autosklearn recipe 2020-05-15 18:03:18 -04:00
Ian Coffey
6f8ac879fe Merge branch 'master' into auto_sklearn 2020-05-14 10:28:57 -04:00
Ian Coffey
1a56c47dfe Improve formatting for autosklearn recipe 2020-05-14 10:25:18 -04:00
romainx
bcf1f53229 Fix #1077 
* Documentation `common.md` updated
* `test_nb_user_change` test written
 2020-05-02 17:25:14 +02:00
James Brock
6bf8482a68 ihaskell-notebook binder urlpath 
Change the Community Stacks ihaskell-notebook Binder urlpath to the revived IHaskell.ipynb notebook.
 2020-04-27 14:57:07 +09:00
Ian Coffey
5fc77daf33 Merge branch 'master' into auto_sklearn 2020-04-24 14:30:34 -04:00
Mark
7fef9cb754 Merge branch 'master' into add_pytables_bottleneck 2020-04-23 12:16:19 -04:00
Mark Dean
e0c13ceb51 update docs 2020-04-23 09:19:06 -04:00
romainx
c0ff7e08b3 Added dask to scipy-notebook doc 2020-04-23 09:08:17 +02:00
romainx
50ce2ec609 Selecting image doc minor fixes 
* Fix a sentence saying that `pandoc` is not installed on `base-notebook` #1013
* Precision on emacs installation (`emacs-nox`) #1059
 2020-04-23 08:30:57 +02:00
Ian Coffey
2dceea02d7 add a recipe around being able to install auto_sklearn 2020-04-22 09:55:14 -04:00
Peter Parente
57b78ba3b0 Merge branch 'master' into add-vim 2020-04-19 12:02:35 -04:00
romainx
2ebcdc5884 #1060 Fix conda command to create env 
`conda env create` is only to create environment from a `YAML` file.  Fixed the command in "Add a Python 3.x environment".

[Reference](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html)
 2020-04-10 22:15:19 +02:00
Peter Prescott
31262fe7ad do requested edit 2020-04-07 09:25:13 +01:00
Peter Prescott
8d918bd978 Fix tab typo 2020-04-06 21:21:31 +01:00
Peter Prescott
5765399ca4 add vim-tiny for now 2020-04-06 11:05:29 +01:00
Peter Prescott
75e586293f add mention of vim to docs 2020-04-06 08:32:34 +01:00
Ray Bell
c063aa650e Add an image tag 2020-03-16 23:22:26 -04:00
Ray Bell
323c3a0348 fix hyperlink 2020-03-16 23:16:43 -04:00
Ray Bell
fcafc155db Update docs/using/recipes.md 
Co-Authored-By: Peter Parente <parente@gmail.com>
 2020-03-16 23:07:07 -04:00
Ray Bell
9e62b3c9d1 recipe: dask 2020-03-14 23:57:29 -04:00
Peter Parente
d3c34cd02f Merge pull request #1031 from romainx/recipes_root 
Recipes documentation: running container as root more information
 2020-03-05 07:42:19 -05:00
Mark Dean
4bff6ab197 add ipympl to docs 2020-03-01 09:21:58 -05:00
romainx
ab000932e5 Clarification about the documentation #608 2020-02-28 05:28:17 +01:00
Kyriakos
9531de0071 cgspatial-notebook 2020-02-27 16:24:24 +02:00
Christoph Schranz
f0bb9e8435 Add GPU-Jupyter in selecting.md community stacks 2020-02-25 08:16:17 +01:00
Michael Pilosov
315688223d instructions for python 3.x kernels with conda 
this was surprisingly hard to find help for online that was up-to-date and worked with the stacks, contributing here in hopes it'll help others.
 2019-12-11 11:51:27 -08:00
Peter Parente
0b2ced306b Add sudo recipe 2019-11-09 16:06:08 -05:00
Patrick Sharp
1d0f620bd5 Add link to sage-notebook Community Stack 
Added sage-notebook as per https://github.com/jupyter/docker-stacks/blob/master/docs/contributing/stacks.md
 2019-08-15 16:14:45 -06:00
Jeff
a667552e78 Option to enable restart without exiting container 
Add optional environment variable RESTARTABLE to enable Jupyter to
be restarted without causing the container to exit.  When the variable
is set, run-one-constantly (from the Ubuntu run-one package) is
inserted into the Jupyter startup command.
 2019-08-02 11:17:04 -06:00