Commit Graph

415 Commits

Author SHA1 Message Date
Jan Janssen
aaa10c4e88 Update Dockerfile 2020-09-20 13:02:53 +02:00
Jan Janssen
0fdbb3bef9 Update Dockerfile 2020-09-20 12:57:17 +02:00
Jan Janssen
07dcef2109 Write __conda_setup to ~/.profile
Some conda packages rely in the `conda activate` to set the corresponding environment variables, therefore just including the `bin` directory in the `PATH` is not sufficient.
2020-09-20 12:41:17 +02:00
John
83ec89d4bc Update Dockerfile 2020-09-19 18:59:31 +02:00
romainx
325dd5b3e2 Fix build (hope)
- miniconda versions and arguments
- remove useless hd5 install (dependency of h5py)
- pin the version of pyarrow
2020-09-19 17:27:47 +02:00
romainx
78c70dce88 Stack update (partial)
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
2020-09-19 07:17:45 +02:00
romainx
39dc7752e8 Fixed test test_cli_args
Changed `""` into `''` to pass an empty token. Seems to be linked to this warning:
```
/opt/conda/lib/python3.8/site-packages/traitlets/traitlets.py:2195: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use '' instead of "''" – or use CUnicode.
```

Added debug information (ouput of the command line).
2020-09-10 20:00:24 +02:00
Greg
e95f3c5e86 add -f option with groupadd
Signed-off-by: Greg <werner.greg@gmail.com>
2020-08-20 20:19:39 -04:00
Chance Zibolski
a1e40faed8 base-notebook: Update notebook to 6.1.3 and jupyterlab to 2.2.5 2020-08-20 09:22:05 -07:00
Ayaz Salikhov
530e2b3834 Merge branch 'master' into asalikhov/py_codestyle 2020-08-16 20:02:40 +03:00
Peter Parente
1031477369 [ci skip] Update READMEs visible on Docker Hub 2020-08-08 15:09:02 -04:00
Peter Parente
5758b59314 Fix SOURCE_COMMIT -> GITHUB_SHA references 2020-08-01 00:12:07 -04:00
Peter Parente
d2cb805740 Clean up hook debugs, leftovers 2020-07-30 07:50:23 -04:00
Peter Parente
0f1ebea3c7 Fix missing container wait in test 2020-07-30 07:50:16 -04:00
Peter Parente
34e73d4f6b Refactor wiki hooks for Actions 2020-07-30 07:49:00 -04:00
Ayaz Salikhov
ec31300c6a Update ubuntu image 2020-07-12 21:55:55 +02:00
Peter Parente
ea01ec4d9f Merge pull request #1120 from Bidek56/miniconda-4.8.3
Upgrading Ubuntu, miniconda and jupyterlab
2020-07-12 15:40:26 -04:00
Harry Weppner
2dd822dd6f suppress "id: jovyan: no such user" message during start 2020-07-06 18:14:04 -07:00
Darek
9441d4462d Upgrading based Ubuntu, miniconda and jupyterlab 2020-07-05 14:55:37 +00:00
Ayaz Salikhov
94cd03d6b9 Fix python codestyle 2020-07-04 18:30:53 +02:00
Darek
da246268af Upgrading miniconda to py38 2020-06-18 12:47:16 +00:00
Peter Parente
3923ac6267 Merge branch 'master' into asalikhov/ubuntu_focal 2020-06-17 22:26:32 -04:00
Ayaz Salikhov
d4a632faef Fix bash files codestyle 2020-06-13 20:32:52 +02:00
Peter Parente
d16063e623 Merge branch 'master' into asalikhov/ubuntu_focal 2020-06-13 13:26:20 -04:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
2ce0b49fb5 Final review 2020-05-30 05:44:53 +02:00
Romain
64c143d3cd Merge branch 'master' into hadolint 2020-05-29 18:44:45 +02:00
Ayaz Salikhov
a2086ce626 Start using Ubuntu 20.04 (focal) 2020-05-28 10:42:03 +02:00
Romain
e3558be988 First lint + fix implemented 2020-05-28 06:24:54 +02:00
Peter Parente
0e899a56aa Merge branch 'master' into PR_jupyterlab_2113 2020-05-26 23:14:55 -04:00
Dirk Grunwald
8ff8e2cff1 upgrade jupyterlab to 2.1.3 to avoid npm delay 2020-05-26 21:29:32 +00:00
Ayaz Salikhov
9096270368 Print image size in manifest 2020-05-26 15:07:25 +02:00
Peter Parente
61fc6377d5 Merge branch 'master' into ppc64le 2020-05-24 09:47:05 -04:00
romainx
5519470151 Fix comment 2020-05-21 21:28:11 +02:00
Oscar de la Torre
9bc523a3dd Updating code from current Dockerfile
Updating miniconda version to 4.8.2
2020-05-19 16:49:10 -05:00
Romain
c26781abc5 Merge branch 'master' into #1077 2020-05-05 06:34:19 +02:00
Romain
e10f2d1347 Merge branch 'master' into #1077 2020-05-03 20:19:34 +02:00
Peter Parente
c32ba3a7f8 Merge branch 'master' into regexp-centos-friendly 2020-05-03 09:39:08 -04:00
romainx
bcf1f53229 Fix #1077
* Documentation `common.md` updated
* `test_nb_user_change` test written
2020-05-02 17:25:14 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
2020-04-29 09:16:28 +02:00
Carsten Pohl
0710677ce2 Changed the regular expression in start.sh that reads the /etc/sudoers file and
adds the conda path as a secure path to sudo.

The regular expression expects that the equals sign has no leading and trailing
spaces after the parameter secure_path. Furthermore it expects that the value
is enclosed in double quotes.

This is the case for the sudoers file in debian based distributions, but the
in centos / redhat based distributions this is not the case. The default value
of the secure_path in centos / redhat based distributions has no double quotes
and leading and trailing spaces.

This change adds optional spaces before and after the space, and makes the
double quotes optional.
2020-04-17 16:10:38 +02:00
romainx
d458afffaf Big upgrade
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
2020-04-04 23:04:45 +02:00
romainx
6bf5922f5a Bump miniconda -> 4.8.2 2020-03-17 20:17:52 +01:00
Thijs Walcarius
7b4a48ec22 Fix #1041: JupyterLab does not need labhub start option anymore 2020-03-12 13:36:04 +01:00
Mark Dean
607e625407 update jupyterlab and plotting extensions 2020-03-10 11:21:27 -04:00
romainx
a0baf97d25 Bump Ubuntu Base Image 2020-03-04 19:11:24 +01:00
Peter Parente
2db4968b35 Merge branch 'master' into fix-fix-permissions 2020-02-27 21:19:00 -05:00
romainx
8943a3d826 Turning channel priority to strict 2020-02-23 09:19:37 +01:00
Robert Cohn
e3831f3f42 Merge branch 'master' into fix-fix-permissions 2020-02-21 08:47:52 -05:00
Robert Cohn
825c5208ec limit fix permissions to /opt/conda 2020-02-21 07:29:49 -06:00