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d7b51cf6b82b2957802040eef49b09989dcf20bf
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162 Commits

Author SHA1 Message Date
romainx
d7b51cf6b8 Add checksum in the dockerfile instead of downloading it 2020-11-13 21:40:45 +01:00
romainx
96ab5502e1 Miniconda -> Miniforge 2020-11-13 17:55:31 +01:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
Romain
332db3db9e Merge pull request #1166 from jan-janssen/master 
Activate conda base environment by default
 2020-09-26 06:46:13 +02:00
Romain
9c97376140 Merge pull request #1159 from romainx/stack_update 
Stack update
 2020-09-26 05:46:22 +02:00
Jan Janssen
9553e22546 Update Dockerfile 2020-09-25 11:35:06 +02:00
Jan Janssen
0d5de3de64 Update Dockerfile 2020-09-25 11:34:18 +02:00
Jan Janssen
d5ade51615 Update Dockerfile 2020-09-20 13:06:33 +02:00
Jan Janssen
76fd840df4 Update Dockerfile 2020-09-20 13:04:32 +02:00
Jan Janssen
aaa10c4e88 Update Dockerfile 2020-09-20 13:02:53 +02:00
Jan Janssen
0fdbb3bef9 Update Dockerfile 2020-09-20 12:57:17 +02:00
Jan Janssen
07dcef2109 Write __conda_setup to ~/.profile 
Some conda packages rely in the `conda activate` to set the corresponding environment variables, therefore just including the `bin` directory in the `PATH` is not sufficient.
 2020-09-20 12:41:17 +02:00
John
83ec89d4bc Update Dockerfile 2020-09-19 18:59:31 +02:00
romainx
325dd5b3e2 Fix build (hope) 
- miniconda versions and arguments
- remove useless hd5 install (dependency of h5py)
- pin the version of pyarrow
 2020-09-19 17:27:47 +02:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
Chance Zibolski
a1e40faed8 base-notebook: Update notebook to 6.1.3 and jupyterlab to 2.2.5 2020-08-20 09:22:05 -07:00
Ayaz Salikhov
ec31300c6a Update ubuntu image 2020-07-12 21:55:55 +02:00
Darek
9441d4462d Upgrading based Ubuntu, miniconda and jupyterlab 2020-07-05 14:55:37 +00:00
Darek
da246268af Upgrading miniconda to py38 2020-06-18 12:47:16 +00:00
Peter Parente
d16063e623 Merge branch 'master' into asalikhov/ubuntu_focal 2020-06-13 13:26:20 -04:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
2ce0b49fb5 Final review 2020-05-30 05:44:53 +02:00
Romain
64c143d3cd Merge branch 'master' into hadolint 2020-05-29 18:44:45 +02:00
Ayaz Salikhov
a2086ce626 Start using Ubuntu 20.04 (focal) 2020-05-28 10:42:03 +02:00
Romain
e3558be988 First lint + fix implemented 2020-05-28 06:24:54 +02:00
Dirk Grunwald
8ff8e2cff1 upgrade jupyterlab to 2.1.3 to avoid npm delay 2020-05-26 21:29:32 +00:00
romainx
d3ef6d89b2 Regular update 2020 W18 
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
 2020-04-29 09:16:28 +02:00
romainx
d458afffaf Big upgrade 
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
 2020-04-04 23:04:45 +02:00
romainx
6bf5922f5a Bump miniconda -> 4.8.2 2020-03-17 20:17:52 +01:00
Mark Dean
607e625407 update jupyterlab and plotting extensions 2020-03-10 11:21:27 -04:00
romainx
a0baf97d25 Bump Ubuntu Base Image 2020-03-04 19:11:24 +01:00
Peter Parente
2db4968b35 Merge branch 'master' into fix-fix-permissions 2020-02-27 21:19:00 -05:00
romainx
8943a3d826 Turning channel priority to strict 2020-02-23 09:19:37 +01:00
Robert Cohn
e3831f3f42 Merge branch 'master' into fix-fix-permissions 2020-02-21 08:47:52 -05:00
Robert Cohn
825c5208ec limit fix permissions to /opt/conda 2020-02-21 07:29:49 -06:00
Guo Quan
a570f43cfb Add ROOT_CONTAINER to base-notebook 
Add another layer of abstraction to the base container, namely the root container `ROOT_CONTAINER`, so that the user can have the flexibility to build the whole series of images with `make` based on a different base image.
 2020-02-04 14:34:23 -05:00
Greg
65825553e7 replace ADD with COPY 
Signed-off-by: Greg <werner.greg@gmail.com>
 2020-01-25 11:22:54 -05:00
Min RK
9c8ac72323 update miniconda to 4.7.12.1 2020-01-23 16:40:48 +01:00
Min RK
fc6022aa61 install pip explicitly 
it should be there automatically, but no harm in being explicit
 2020-01-23 10:04:18 +01:00
Erik Sundell
525b3c0f62 Bump Ubuntu 18.04 to latest build 2020-01-21 10:24:46 +01:00
Erik Sundell
043fabb4d5 Bumped notebook, jupyterhub, jupyterlab versions 2020-01-17 16:29:54 +01:00
AllOtherUserNamesTaken
a83e18b340 Update ubuntu base image. 
Twistlock vulnerability scanning showed OS issues removable by upgrading of package versions.
 2019-12-07 13:55:48 +02:00
Sang Han
8bce6dc3aa allow configuring python version using buildarg 2019-11-19 14:22:00 -08:00
Peter Parente
b7b941cd8d Merge pull request #957 from flixr/jupyterlab_1.2.1 
update jupyterlab to 1.2.1
 2019-11-09 17:16:04 -05:00
Peter Parente
3163904f1a Merge pull request #942 from ilveroluca/pr/fix-perms 
Make fix-permissions executable by all
 2019-11-09 15:32:36 -05:00
Peter Parente
fe64133b9c Merge pull request #940 from ilveroluca/dont_upgrade 
Don't upgrade base image
 2019-11-09 15:31:29 -05:00
Felix Ruess
df3b6652c7 update jupyterlab to 1.2.1 2019-11-08 11:27:32 +01:00
Luca Pireddu
31b84775a3 Make fix-permissions executable by all 2019-09-24 16:23:03 +02:00
Luca Pireddu
65d8260880 Don't upgrade base image; clean cached deb files after apt-get install 2019-09-18 13:59:15 +02:00