Commit Graph

98 Commits

Author SHA1 Message Date
Ayaz Salikhov
907e260eda Fix docs 2022-02-02 13:03:07 +00:00
Ayaz Salikhov
507b1740c4 Install more r packages for arm 2022-02-02 12:51:25 +00:00
Ayaz Salikhov
e0bebfff74 Fix hadolint bug 2021-10-16 17:09:11 +03:00
Erik Sundell
4fc6eac306 Merge pull request #1455 from mathbunnyru/asalikhov/remove_old_workaround
Remove old bug workaround
2021-09-03 12:19:47 +02:00
Ayaz Salikhov
06fdbd5b92 Remove old bug workaround 2021-09-03 10:15:09 +03:00
Ayaz Salikhov
0f9ab2afd7 Fix style 2021-09-03 10:12:38 +03:00
Ayaz Salikhov
b6de9ce5b6 Build r-notebook under arm (again) 2021-09-03 07:00:37 +00:00
Ayaz Salikhov
b5fb545463 Move comment out of install 2021-09-01 08:51:18 +03:00
pabepadu
64a94fa68a Remove comment inside command line 2021-08-31 23:25:33 +02:00
Ayaz Salikhov
1fce48cd6c Use mamba instead of conda where possible 2021-08-24 23:41:32 +03:00
Ayaz Salikhov
a6d0ed456e Merge branch 'master' into asalikhov/automatic_conda_versioning 2021-07-09 16:52:31 +03:00
Ayaz Salikhov
3c9e62efce Introduce owner to Dockerfiles to make it easy to test locally 2021-07-08 17:26:56 +03:00
Ayaz Salikhov
bfb8cc7d50 Allow conda to automatically deduce package versions 2021-06-20 22:13:15 +03:00
Ayaz Salikhov
c36dd78de1 Update r-rmarkdown 2021-06-18 16:17:32 +03:00
Ayaz Salikhov
b939948a62 Update packages 2021-06-13 00:22:22 +03:00
Ayaz Salikhov
b964b90a1c Merge branch 'master' into asalikhov/update 2021-06-07 23:04:34 +03:00
Ayaz Salikhov
8cf181add0 Merge branch 'master' into asalikhov/update 2021-05-29 17:36:17 +03:00
Ayaz Salikhov
0999f1a36f Unify bash variables usage and add quotes where needed 2021-05-26 13:06:10 +03:00
Ayaz Salikhov
ccebe16e6e More installation updates 2021-05-25 14:34:02 +03:00
Ayaz Salikhov
19cb1cf8de Merge branch 'master' into asalikhov/update 2021-05-23 22:55:05 +03:00
Ayaz Salikhov
afa7daacdf Update docs to better reflect current state 2021-05-23 15:12:07 +03:00
Ayaz Salikhov
c281c03cf7 Merge branch 'master' into asalikhov/update 2021-05-22 15:23:28 +03:00
Ayaz Salikhov
fbceaa9892 Fixes 2021-05-22 14:01:01 +03:00
Ayaz Salikhov
dc05be8ff5 Downgrade r-base 2021-05-22 13:27:19 +03:00
Ayaz Salikhov
7b14917cb0 Update packages 2021-05-22 00:11:22 +03:00
romainx
565af01950 Regular update 2021-04-08 2021-04-08 06:20:32 +02:00
romainx
d0e066e116 Regular update 2021-03-17 2021-03-17 22:13:19 +01:00
DavidSpek
66f8896f6a update r-rmarkdown to 2.7* 2021-02-24 19:41:43 +01:00
romainx
c84ea78306 Regular update 2021-02-11 19:49:03 +01:00
romainx
515ab148a6 fix-permissions in home dir for r-notebook 2021-01-22 15:47:27 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
2020-10-20 11:36:34 +02:00
romainx
78c70dce88 Stack update (partial)
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
2020-09-19 07:17:45 +02:00
ttimbers
3748d0f8a5 merging upstream changes 2020-06-15 22:58:06 -07:00
Tiffany A. Timbers
6c8db49d8a Update r-notebook/Dockerfile
Co-authored-by: Romain <romainx@users.noreply.github.com>
2020-06-06 21:32:08 -07:00
Tiffany A. Timbers
017040d785 Update r-notebook/Dockerfile
Co-authored-by: Romain <romainx@users.noreply.github.com>
2020-06-06 21:31:59 -07:00
Tiffany A. Timbers
bc26d1a776 Update r-notebook/Dockerfile
Co-authored-by: Romain <romainx@users.noreply.github.com>
2020-06-06 21:31:43 -07:00
ttimbers
a883ce1794 versions and tidymodels
- added versions to ggplot2 and sparklyr for all-spark-notebook
- added tidymodels to r-notebook and docs

closes #1102
2020-06-05 14:41:12 -07:00
ttimbers
13059e5f06 removed plyr and reshape2
closes #1103
2020-06-05 14:04:36 -07:00
Tiffany A. Timbers
e47f971efd Updated to r4.0
and packages that work with it.
2020-06-05 13:56:54 -07:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
7b48e43b74 Fix hadolint deviations 2020-05-29 19:33:24 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
2020-04-29 09:16:28 +02:00
romainx
d458afffaf Big upgrade
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
2020-04-04 23:04:45 +02:00
romainx
a3aeae9721 Bump r-notebook 2020-02-23 13:28:04 +01:00
Richard Darst
8bfffcaa3f Sort package installation lines alphabetically for easier comparison 2019-08-06 10:44:10 +03:00
Richard Darst
686f9770d8 Update r-notebook package versions 2019-08-04 01:45:01 +03:00
Tiffany A. Timbers
3e91889e51 Added install of e1071 R package
The e1071 R package is a dependency of functions within the caret package. Without it, `caret::train` (for example) cannot be run. This pull request addresses issue #889 (https://github.com/jupyter/docker-stacks/issues/889). 

note - I first tried installing e1071 in the RUN command started on line 27 but that resulted in e1071 not installing (don't know why) but adding an additional RUN command led to succesful installation... So I just went with it.
2019-06-20 12:06:12 -07:00
echowhisky
40c5c07b0a added -f flag to all conda clean commands
This commit adds the additional `-f` force command to all uses of `conda
clean --all` through the repo. Size should be smaller, but still testing
if anything breaks. See issue #861.
2019-05-04 19:11:32 +00:00