Commit Graph

169 Commits

Author SHA1 Message Date
Ayaz Salikhov
044762949b Merge pull request #1441 from mathbunnyru/asalikhov/use_mamba_everywhere
Use mamba instead of conda where possible
2021-08-25 13:58:54 +03:00
Ayaz Salikhov
60eba2aa10 Do not pin pooch version 2021-08-25 08:11:19 +03:00
Ayaz Salikhov
1fce48cd6c Use mamba instead of conda where possible 2021-08-24 23:41:32 +03:00
Ayaz Salikhov
709f6750ef Pin pooch version to make skimage work, waiting for feedstock release (#1439) 2021-08-24 16:11:13 +03:00
Ayaz Salikhov
a6d0ed456e Merge branch 'master' into asalikhov/automatic_conda_versioning 2021-07-09 16:52:31 +03:00
Ayaz Salikhov
3c9e62efce Introduce owner to Dockerfiles to make it easy to test locally 2021-07-08 17:26:56 +03:00
Ayaz Salikhov
78a72754e1 Update mamba and some packages 2021-07-02 20:34:38 +03:00
Ayaz Salikhov
bfb8cc7d50 Allow conda to automatically deduce package versions 2021-06-20 22:13:15 +03:00
Ayaz Salikhov
b939948a62 Update packages 2021-06-13 00:22:22 +03:00
Ayaz Salikhov
b964b90a1c Merge branch 'master' into asalikhov/update 2021-06-07 23:04:34 +03:00
Ayaz Salikhov
396024a4dd Merge pull request #1335 from mathbunnyru/asalikhov/unify_bash_variables
Unify bash variables usage and add quotes where needed
2021-06-07 23:00:11 +03:00
Ayaz Salikhov
450d0163fc Replace vincent with altair 2021-06-01 12:13:22 +03:00
Ayaz Salikhov
0999f1a36f Unify bash variables usage and add quotes where needed 2021-05-26 13:06:10 +03:00
Ayaz Salikhov
19cb1cf8de Merge branch 'master' into asalikhov/update 2021-05-23 22:55:05 +03:00
Ayaz Salikhov
afa7daacdf Update docs to better reflect current state 2021-05-23 15:12:07 +03:00
Ayaz Salikhov
c281c03cf7 Merge branch 'master' into asalikhov/update 2021-05-22 15:23:28 +03:00
Ayaz Salikhov
fb06310754 Use altair and mamba instead of conda 2021-05-22 14:43:18 +03:00
Ayaz Salikhov
fbceaa9892 Fixes 2021-05-22 14:01:01 +03:00
Ayaz Salikhov
7b14917cb0 Update packages 2021-05-22 00:11:22 +03:00
romainx
25d4876efe Regular update 2021-05-04 18:36:03 +02:00
romainx
565af01950 Regular update 2021-04-08 2021-04-08 06:20:32 +02:00
romainx
d0e066e116 Regular update 2021-03-17 2021-03-17 22:13:19 +01:00
romainx
753abff645 Regular update 2021-02-28 06:56:36 +01:00
romainx
c84ea78306 Regular update 2021-02-11 19:49:03 +01:00
romainx
92289757d2 JupyterLab 3.0 and other updates 2021-01-22 09:36:22 +01:00
romainx
6ae8512231 Rollback to JupyterLab 2.2x
Waiting for extensions compat
2020-12-30 11:39:52 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
86523f0619 Regular update + improvements 2020-12-01 22:05:21 +01:00
romainx
32090f6011 Update docker stack 2020-11-20
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
2020-10-20 11:36:34 +02:00
Romain
9c97376140 Merge pull request #1159 from romainx/stack_update
Stack update
2020-09-26 05:46:22 +02:00
Mark Dean
f527551a44 add cm-super 2020-09-25 11:16:19 -04:00
romainx
325dd5b3e2 Fix build (hope)
- miniconda versions and arguments
- remove useless hd5 install (dependency of h5py)
- pin the version of pyarrow
2020-09-19 17:27:47 +02:00
romainx
78c70dce88 Stack update (partial)
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
2020-09-19 07:17:45 +02:00
Ben Mares
81131ffce0 Pandas to 1.1 2020-08-06 10:33:02 +02:00
Ayaz Salikhov
bf2cabc619 Update scipy-notebook packages 2020-07-13 21:25:04 +02:00
chrisgorgo
47d6c62bc7 Updating sklearn to version 0.23 2020-06-23 19:01:47 -07:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
2ce0b49fb5 Final review 2020-05-30 05:44:53 +02:00
Romain
7b48e43b74 Fix hadolint deviations 2020-05-29 19:33:24 +02:00
romainx
f54f36a208 Rollback numba to 0.48
Dependencies resolution fails with numba `0.49`. I do not know the root cause.
Here is the difference between the two versions.

```bash
$ conda search --info numba

numba 0.48.0 py38hb3f55d8_0
---------------------------
file name   : numba-0.48.0-py38hb3f55d8_0.tar.bz2
name        : numba
version     : 0.48.0
build       : py38hb3f55d8_0
build number: 0
size        : 3.4 MB
license     : BSD 2-clause
subdir      : linux-64
url         : https://conda.anaconda.org/conda-forge/linux-64/numba-0.48.0-py38hb3f55d8_0.tar.bz2
md5         : 580c5132d9f575462db40daf20201ff1
timestamp   : 2020-01-27 17:39:57 UTC
constraints :
  - tbb >=2018.0.5
  - python_abi * *_cp38
dependencies:
  - libgcc-ng >=7.3.0
  - libstdcxx-ng >=7.3.0
  - llvmlite >=0.31.0,<0.32.0a0
  - numpy >=1.14.6,<2.0a0
  - python >=3.8,<3.9.0a0
  - setuptools

numba 0.49.0 py36h0573a6f_0
---------------------------
file name   : numba-0.49.0-py36h0573a6f_0.conda
name        : numba
version     : 0.49.0
build       : py36h0573a6f_0
build number: 0
size        : 3.1 MB
license     : BSD 2-clause
subdir      : linux-64
url         : https://repo.anaconda.com/pkgs/main/linux-64/numba-0.49.0-py36h0573a6f_0.conda
md5         : cdbf81e0d643b5e90441ccf110b97a3d
timestamp   : 2020-04-17 17:08:20 UTC
constraints :
  - tbb >=2018.0.5
dependencies:
  - libgcc-ng >=7.3.0
  - libstdcxx-ng >=7.3.0
  - llvmlite >=0.32.0
  - llvmlite >=0.32.0,<0.33.0a0
  - numpy >=1.14.6,<2.0a0
  - python >=3.6,<3.7.0a0
  - setuptools
  - tbb >=2020.0
 ```
2020-04-29 12:12:53 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
2020-04-29 09:16:28 +02:00
Mark Dean
44fbf93bfd add pytables and bottleneck 2020-04-22 19:41:41 -04:00
romainx
d458afffaf Big upgrade
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
2020-04-04 23:04:45 +02:00
Peter Parente
073aee8f84 Merge branch 'master' into lab_clean 2020-03-16 15:29:31 -04:00
romainx
309453fa00 Using jupyter lab clean (#752) 2020-03-15 06:24:56 +01:00
Mark Dean
9cfdc92323 include dvipng 2020-03-12 16:56:56 -04:00
Peter Parente
046a4c311c Loose jupyter-matplotlib pinning for consistency 2020-03-11 08:06:24 -04:00
Mark Dean
14b9d786c8 pin jupyter-matplotlib 2020-03-10 20:02:02 -04:00
Mark Dean
80bf115c80 put back instructions 2020-03-10 11:24:06 -04:00
Mark Dean
607e625407 update jupyterlab and plotting extensions 2020-03-10 11:21:27 -04:00