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102 Commits

Author SHA1 Message Date
Ben Mares
476829f0f4 Proposed improvements for G_SLICE (#1697) 
* Try to fix mamba under aarch64 QEMU by setting ENV G_SLICE=always-malloc

* Set G_SLICE inside if statement

* Write "extract_threads: 1" to /opt/.condarc

Co-authored-by: Ayaz Salikhov <mathbunnyru@gmail.com>
 2022-05-03 16:51:38 +03:00
Ayaz Salikhov
b44537f7a6 Better arm image for datascience-notebook 2022-05-02 02:36:36 +03:00
Ayaz Salikhov
d35992de68 Add explicit pipefail and bash shell to all Dockerfiles 2022-03-17 13:07:47 +02:00
Ayaz Salikhov
a0034964d6 Fix r-notebook error 2022-03-17 12:59:17 +02:00
Ayaz Salikhov
907e260eda Fix docs 2022-02-02 13:03:07 +00:00
Ayaz Salikhov
507b1740c4 Install more r packages for arm 2022-02-02 12:51:25 +00:00
Ayaz Salikhov
e0bebfff74 Fix hadolint bug 2021-10-16 17:09:11 +03:00
Erik Sundell
4fc6eac306 Merge pull request #1455 from mathbunnyru/asalikhov/remove_old_workaround 
Remove old bug workaround
 2021-09-03 12:19:47 +02:00
Ayaz Salikhov
06fdbd5b92 Remove old bug workaround 2021-09-03 10:15:09 +03:00
Ayaz Salikhov
0f9ab2afd7 Fix style 2021-09-03 10:12:38 +03:00
Ayaz Salikhov
b6de9ce5b6 Build r-notebook under arm (again) 2021-09-03 07:00:37 +00:00
Ayaz Salikhov
b5fb545463 Move comment out of install 2021-09-01 08:51:18 +03:00
pabepadu
64a94fa68a Remove comment inside command line 2021-08-31 23:25:33 +02:00
Ayaz Salikhov
1fce48cd6c Use mamba instead of conda where possible 2021-08-24 23:41:32 +03:00
Ayaz Salikhov
a6d0ed456e Merge branch 'master' into asalikhov/automatic_conda_versioning 2021-07-09 16:52:31 +03:00
Ayaz Salikhov
3c9e62efce Introduce owner to Dockerfiles to make it easy to test locally 2021-07-08 17:26:56 +03:00
Ayaz Salikhov
bfb8cc7d50 Allow conda to automatically deduce package versions 2021-06-20 22:13:15 +03:00
Ayaz Salikhov
c36dd78de1 Update r-rmarkdown 2021-06-18 16:17:32 +03:00
Ayaz Salikhov
b939948a62 Update packages 2021-06-13 00:22:22 +03:00
Ayaz Salikhov
b964b90a1c Merge branch 'master' into asalikhov/update 2021-06-07 23:04:34 +03:00
Ayaz Salikhov
8cf181add0 Merge branch 'master' into asalikhov/update 2021-05-29 17:36:17 +03:00
Ayaz Salikhov
0999f1a36f Unify bash variables usage and add quotes where needed 2021-05-26 13:06:10 +03:00
Ayaz Salikhov
ccebe16e6e More installation updates 2021-05-25 14:34:02 +03:00
Ayaz Salikhov
19cb1cf8de Merge branch 'master' into asalikhov/update 2021-05-23 22:55:05 +03:00
Ayaz Salikhov
afa7daacdf Update docs to better reflect current state 2021-05-23 15:12:07 +03:00
Ayaz Salikhov
c281c03cf7 Merge branch 'master' into asalikhov/update 2021-05-22 15:23:28 +03:00
Ayaz Salikhov
fbceaa9892 Fixes 2021-05-22 14:01:01 +03:00
Ayaz Salikhov
dc05be8ff5 Downgrade r-base 2021-05-22 13:27:19 +03:00
Ayaz Salikhov
7b14917cb0 Update packages 2021-05-22 00:11:22 +03:00
romainx
565af01950 Regular update 2021-04-08 2021-04-08 06:20:32 +02:00
romainx
d0e066e116 Regular update 2021-03-17 2021-03-17 22:13:19 +01:00
DavidSpek
66f8896f6a update r-rmarkdown to 2.7* 2021-02-24 19:41:43 +01:00
romainx
c84ea78306 Regular update 2021-02-11 19:49:03 +01:00
romainx
515ab148a6 fix-permissions in home dir for r-notebook 2021-01-22 15:47:27 +01:00
romainx
e81957ffda Regular update: 2020-12-27 2020-12-27 17:02:14 +01:00
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
ttimbers
3748d0f8a5 merging upstream changes 2020-06-15 22:58:06 -07:00
Tiffany A. Timbers
6c8db49d8a Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:32:08 -07:00
Tiffany A. Timbers
017040d785 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:59 -07:00
Tiffany A. Timbers
bc26d1a776 Update r-notebook/Dockerfile 
Co-authored-by: Romain <romainx@users.noreply.github.com>
 2020-06-06 21:31:43 -07:00
ttimbers
a883ce1794 versions and tidymodels 
- added versions to ggplot2 and sparklyr for all-spark-notebook
- added tidymodels to r-notebook and docs

closes #1102
 2020-06-05 14:41:12 -07:00
ttimbers
13059e5f06 removed plyr and reshape2 
closes #1103
 2020-06-05 14:04:36 -07:00
Tiffany A. Timbers
e47f971efd Updated to r4.0 
and packages that work with it.
 2020-06-05 13:56:54 -07:00
Romain
5e6645d137 Ignore DL3006 and DL3008 by default 2020-06-01 06:23:44 +02:00
Romain
7b48e43b74 Fix hadolint deviations 2020-05-29 19:33:24 +02:00
romainx
d3ef6d89b2 Regular update 2020 W18 
* Bump `base-notebook`
	* OS version
	* `jupyterlab`
* Bump `scipy-notebook`
	* `beautifulsoup4`
	* `cloudpickle`
	* `dask`
	* `numba`
	* `xlrd`: version specified (it was not the case)
* Bump `datascience-notebook`
	* `r-devtools`
	* `r-forecast`
	* Julia version
	* Test added to check if Julia is correctly installed (`julia --version`)
	* Note: A new version of `r-base` is out `4.0.0` however it cannot be installed yet since dependencies with other packages cannot be resolved.
* Bump `r-notebook`
	* Same as `datascience-notebook` except Julia.
* Bump `all-spark-notebook`
	* `r-sparklyr`
 2020-04-29 09:16:28 +02:00
romainx
d458afffaf Big upgrade 
- Bump root container version
- Bump  packages of
  - scipy-notebook
  - r-notebook
  - datascience-notebook
- add -y flag to jupyter lab commands in scipy-notebook
- Fix a bug in check outdated packages when packages installed through pip
 2020-04-04 23:04:45 +02:00
romainx
a3aeae9721 Bump r-notebook 2020-02-23 13:28:04 +01:00