mirror of
https://github.com/jupyter/docker-stacks.git
synced 2025-10-10 19:42:58 +00:00
92 lines
3.1 KiB
Docker
92 lines
3.1 KiB
Docker
# Copyright (c) Jupyter Development Team.
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# Distributed under the terms of the Modified BSD License.
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ARG BASE_CONTAINER=jupyter/scipy-notebook
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FROM $BASE_CONTAINER
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LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
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# Fix DL4006
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SHELL ["/bin/bash", "-o", "pipefail", "-c"]
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USER root
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# Julia installation
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# Default values can be overridden at build time
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# (ARGS are in lower case to distinguish them from ENV)
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# Check https://julialang.org/downloads/
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ARG julia_version="1.6.0"
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# SHA256 checksum
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ARG julia_checksum="463b71dc70ca7094c0e0fd6d55d130051a7901e8dec5eb44d6002c57d1bd8585"
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# R pre-requisites
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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fonts-dejavu \
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gfortran \
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gcc && \
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apt-get clean && rm -rf /var/lib/apt/lists/*
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# Julia dependencies
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# install Julia packages in /opt/julia instead of $HOME
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ENV JULIA_DEPOT_PATH=/opt/julia \
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JULIA_PKGDIR=/opt/julia \
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JULIA_VERSION="${julia_version}"
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WORKDIR /tmp
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# hadolint ignore=SC2046
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RUN mkdir "/opt/julia-${JULIA_VERSION}" && \
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wget -q https://julialang-s3.julialang.org/bin/linux/x64/$(echo "${JULIA_VERSION}" | cut -d. -f 1,2)"/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" && \
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echo "${julia_checksum} *julia-${JULIA_VERSION}-linux-x86_64.tar.gz" | sha256sum -c - && \
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tar xzf "julia-${JULIA_VERSION}-linux-x86_64.tar.gz" -C "/opt/julia-${JULIA_VERSION}" --strip-components=1 && \
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rm "/tmp/julia-${JULIA_VERSION}-linux-x86_64.tar.gz" && \
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ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia
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# Show Julia where conda libraries are \
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RUN mkdir /etc/julia && \
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echo "push!(Libdl.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" >> /etc/julia/juliarc.jl && \
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# Create JULIA_PKGDIR \
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mkdir "${JULIA_PKGDIR}" && \
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chown "${NB_USER}" "${JULIA_PKGDIR}" && \
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fix-permissions "${JULIA_PKGDIR}"
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USER $NB_UID
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# R packages including IRKernel which gets installed globally.
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RUN conda install --quiet --yes \
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'r-base=4.0.3' \
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'r-caret=6.0*' \
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'r-crayon=1.4*' \
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'r-devtools=2.4*' \
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'r-forecast=8.14*' \
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'r-hexbin=1.28*' \
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'r-htmltools=0.5*' \
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'r-htmlwidgets=1.5*' \
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'r-irkernel=1.1*' \
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'r-nycflights13=1.0*' \
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'r-randomforest=4.6*' \
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'r-rcurl=1.98*' \
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'r-rmarkdown=2.7*' \
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'r-rsqlite=2.2*' \
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'r-shiny=1.6*' \
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'r-tidyverse=1.3*' \
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'rpy2=3.4*' && \
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# Add Julia packages.
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# Install IJulia as jovyan and then move the kernelspec out
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# to the system share location. Avoids problems with runtime UID change not
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# taking effect properly on the .local folder in the jovyan home dir.
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RUN julia -e 'import Pkg; Pkg.update()' && \
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julia -e 'import Pkg; Pkg.add("HDF5")' && \
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julia -e 'using Pkg; pkg"add IJulia"; pkg"precompile"' && \
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# move kernelspec out of home \
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mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/kernels/" && \
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chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \
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rm -rf "${HOME}/.local" && \
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fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter"
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WORKDIR $HOME
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