Files
docker-stacks/scipy-notebook/Dockerfile
2020-08-06 10:33:02 +02:00

84 lines
2.6 KiB
Docker

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG BASE_CONTAINER=jupyter/minimal-notebook
FROM $BASE_CONTAINER
LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
USER root
# ffmpeg for matplotlib anim & dvipng for latex labels
RUN apt-get update && \
apt-get install -y --no-install-recommends ffmpeg dvipng && \
rm -rf /var/lib/apt/lists/*
USER $NB_UID
# Install Python 3 packages
RUN conda install --quiet --yes \
'beautifulsoup4=4.9.*' \
'conda-forge::blas=*=openblas' \
'bokeh=2.1.*' \
'bottleneck=1.3.*' \
'cloudpickle=1.5.*' \
'cython=0.29.*' \
'dask=2.20.*' \
'dill=0.3.*' \
'h5py=2.10.*' \
'hdf5=1.10.*' \
'ipywidgets=7.5.*' \
'ipympl=0.5.*'\
'matplotlib-base=3.2.*' \
# numba update to 0.49 fails resolving deps.
'numba=0.48.*' \
'numexpr=2.7.*' \
'pandas=1.1.*' \
'patsy=0.5.*' \
'protobuf=3.12.*' \
'pytables=3.6.*' \
'scikit-image=0.17.*' \
'scikit-learn=0.23.*' \
'scipy=1.5.*' \
'seaborn=0.10.*' \
'sqlalchemy=1.3.*' \
'statsmodels=0.11.*' \
'sympy=1.6.*' \
'vincent=0.4.*' \
'widgetsnbextension=3.5.*'\
'xlrd=1.2.*' \
&& \
conda clean --all -f -y && \
# Activate ipywidgets extension in the environment that runs the notebook server
jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
# Also activate ipywidgets extension for JupyterLab
# Check this URL for most recent compatibilities
# https://github.com/jupyter-widgets/ipywidgets/tree/master/packages/jupyterlab-manager
jupyter labextension install @jupyter-widgets/jupyterlab-manager@^2.0.0 --no-build && \
jupyter labextension install @bokeh/jupyter_bokeh@^2.0.0 --no-build && \
jupyter labextension install jupyter-matplotlib@^0.7.2 --no-build && \
jupyter lab build -y && \
jupyter lab clean -y && \
npm cache clean --force && \
rm -rf "/home/${NB_USER}/.cache/yarn" && \
rm -rf "/home/${NB_USER}/.node-gyp" && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# Install facets which does not have a pip or conda package at the moment
WORKDIR /tmp
RUN git clone https://github.com/PAIR-code/facets.git && \
jupyter nbextension install facets/facets-dist/ --sys-prefix && \
rm -rf /tmp/facets && \
fix-permissions "${CONDA_DIR}" && \
fix-permissions "/home/${NB_USER}"
# Import matplotlib the first time to build the font cache.
ENV XDG_CACHE_HOME="/home/${NB_USER}/.cache/"
RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
fix-permissions "/home/${NB_USER}"
USER $NB_UID
WORKDIR $HOME