mirror of
https://github.com/jupyter/docker-stacks.git
synced 2025-10-12 20:42:57 +00:00
59 lines
1.8 KiB
Docker
59 lines
1.8 KiB
Docker
# Copyright (c) Jupyter Development Team.
|
|
# Distributed under the terms of the Modified BSD License.
|
|
FROM jupyter/scipy-notebook
|
|
|
|
MAINTAINER Jupyter Project <jupyter@googlegroups.com>
|
|
|
|
USER root
|
|
|
|
# R pre-requisites
|
|
RUN apt-get update && \
|
|
apt-get install -y --no-install-recommends \
|
|
fonts-dejavu \
|
|
gfortran \
|
|
gcc && apt-get clean && \
|
|
rm -rf /var/lib/apt/lists/*
|
|
|
|
# Julia dependencies
|
|
RUN apt-get update && \
|
|
apt-get install -y --no-install-recommends \
|
|
julia \
|
|
libnettle4 && apt-get clean && \
|
|
rm -rf /var/lib/apt/lists/*
|
|
|
|
USER $NB_USER
|
|
|
|
# R packages including IRKernel which gets installed globally.
|
|
RUN conda config --add channels r && \
|
|
conda install --quiet --yes \
|
|
'rpy2=2.7*' \
|
|
'r-base=3.2*' \
|
|
'r-irkernel=0.5*' \
|
|
'r-plyr=1.8*' \
|
|
'r-devtools=1.9*' \
|
|
'r-dplyr=0.4*' \
|
|
'r-ggplot2=1.0*' \
|
|
'r-tidyr=0.3*' \
|
|
'r-shiny=0.12*' \
|
|
'r-rmarkdown=0.8*' \
|
|
'r-forecast=5.8*' \
|
|
'r-stringr=0.6*' \
|
|
'r-rsqlite=1.0*' \
|
|
'r-reshape2=1.4*' \
|
|
'r-nycflights13=0.1*' \
|
|
'r-caret=6.0*' \
|
|
'r-rcurl=1.95*' \
|
|
'r-randomforest=4.6*' && conda clean -tipsy
|
|
|
|
# Install IJulia packages as jovyan and then move the kernelspec out
|
|
# to the system share location. Avoids problems with runtime UID change not
|
|
# taking effect properly on the .local folder in the jovyan home dir.
|
|
RUN julia -e 'Pkg.add("IJulia")' && \
|
|
mv /home/$NB_USER/.local/share/jupyter/kernels/julia* $CONDA_DIR/share/jupyter/kernels/ && \
|
|
chmod -R go+rx $CONDA_DIR/share/jupyter
|
|
|
|
# Show Julia where conda libraries are
|
|
# Add essential packages
|
|
RUN echo "push!(Sys.DL_LOAD_PATH, \"$CONDA_DIR/lib\")" > /home/$NB_USER/.juliarc.jl && \
|
|
julia -e 'Pkg.add("Gadfly")' && julia -e 'Pkg.add("RDatasets")' && julia -F -e 'Pkg.add("HDF5")'
|