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5c2618f27a
* create `.juliarc.jl` start up script to point Julia to conda libraries, specifically the hdf5 libraries installed through the h5py package in the scipy stack * add the HDF5 Julia package Update README.md to document HDF5 addition Add -F option to force config load Add the -F flag to julia expression execution to load .juliarc.jl before execution.
60 lines
1.8 KiB
Docker
60 lines
1.8 KiB
Docker
# Copyright (c) Jupyter Development Team.
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# Distributed under the terms of the Modified BSD License.
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FROM jupyter/scipy-notebook
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MAINTAINER Jupyter Project <jupyter@googlegroups.com>
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USER root
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# R pre-requisites
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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fonts-dejavu \
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gfortran \
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gcc && apt-get clean && \
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rm -rf /var/lib/apt/lists/*
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# Julia dependencies
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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julia \
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libnettle4 && apt-get clean && \
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rm -rf /var/lib/apt/lists/*
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USER jovyan
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# R packages including IRKernel which gets installed globally.
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RUN conda config --add channels r && \
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conda install --quiet --yes \
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'rpy2=2.7*' \
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'r-base=3.2*' \
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'r-irkernel=0.5*' \
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'r-plyr=1.8*' \
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'r-devtools=1.9*' \
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'r-dplyr=0.4*' \
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'r-ggplot2=1.0*' \
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'r-tidyr=0.3*' \
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'r-shiny=0.12*' \
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'r-rmarkdown=0.8*' \
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'r-forecast=5.8*' \
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'r-stringr=0.6*' \
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'r-rsqlite=1.0*' \
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'r-reshape2=1.4*' \
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'r-nycflights13=0.1*' \
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'r-caret=6.0*' \
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'r-rcurl=1.95*' \
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'r-randomforest=4.6*' && conda clean -tipsy
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# Install IJulia packages as jovyan and then move the kernelspec out
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# to the system share location. Avoids problems with runtime UID change not
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# taking effect properly on the .local folder in the jovyan home dir.
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RUN julia -e 'Pkg.add("IJulia")' && \
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mv /home/$NB_USER/.local/share/jupyter/kernels/* $CONDA_DIR/share/jupyter/kernels/ && \
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chmod -R go+rx $CONDA_DIR/share/jupyter && \
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rm -rf /home/$NB_USER/.local/share
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# Show Julia where conda libraries are
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# Add essential packages
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RUN echo 'push!(Sys.DL_LOAD_PATH, "/opt/conda/lib")' > /home/$NB_USER/.juliarc.jl && \
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julia -e 'Pkg.add("Gadfly")' && julia -e 'Pkg.add("RDatasets")' && julia -F -e 'Pkg.add("HDF5")'
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