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docker-stacks/scipy-notebook/Dockerfile

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2.6 KiB
Docker

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
ARG BASE_CONTAINER=jupyter/minimal-notebook
FROM $BASE_CONTAINER
LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
USER root
# ffmpeg for matplotlib anim
RUN apt-get update && \
apt-get install -y --no-install-recommends ffmpeg && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
USER $NB_UID
# Install Python 3 packages
# Remove pyqt and qt pulled in for matplotlib since we're only ever going to
# use notebook-friendly backends in these images
RUN conda install --quiet --yes \
'conda-forge::blas=*=openblas' \
'ipywidgets=7.2*' \
'pandas=0.23*' \
'numexpr=2.6*' \
'matplotlib=2.2*' \
'scipy=1.1*' \
'seaborn=0.9*' \
'scikit-learn=0.19*' \
'scikit-image=0.14*' \
'sympy=1.1*' \
'cython=0.28*' \
'patsy=0.5*' \
'statsmodels=0.9*' \
'cloudpickle=0.5*' \
'dill=0.2*' \
'numba=0.38*' \
'bokeh=0.13*' \
'sqlalchemy=1.2*' \
'hdf5=1.10*' \
'h5py=2.7*' \
'vincent=0.4.*' \
'beautifulsoup4=4.6.*' \
'protobuf=3.*' \
'xlrd' && \
conda remove --quiet --yes --force qt pyqt && \
conda clean -tipsy && \
# Activate ipywidgets extension in the environment that runs the notebook server
jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
# Also activate ipywidgets extension for JupyterLab
# Check this URL for most recent compatibilities
# https://github.com/jupyter-widgets/ipywidgets/tree/master/packages/jupyterlab-manager
jupyter labextension install @jupyter-widgets/jupyterlab-manager@^0.37.0 && \
# Pin to 0.6.2 until we can move to Lab 0.35 (jupyterlab_bokeh didn't bump to 0.7.0)
jupyter labextension install jupyterlab_bokeh@0.6.2 && \
npm cache clean --force && \
rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
rm -rf /home/$NB_USER/.cache/yarn && \
rm -rf /home/$NB_USER/.node-gyp && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER
# Install facets which does not have a pip or conda package at the moment
RUN cd /tmp && \
git clone https://github.com/PAIR-code/facets.git && \
cd facets && \
jupyter nbextension install facets-dist/ --sys-prefix && \
cd && \
rm -rf /tmp/facets && \
fix-permissions $CONDA_DIR && \
fix-permissions /home/$NB_USER
# Import matplotlib the first time to build the font cache.
ENV XDG_CACHE_HOME /home/$NB_USER/.cache/
RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
fix-permissions /home/$NB_USER
USER $NB_UID