Merge pull request #1809 from minrk/no-expire-again

don't expire objects on commit

jupyterhub/oauth/store.py

@@ -70,11 +70,12 @@ class AccessTokenStore(HubDBMixin, oauth2.store.AccessTokenStore):
 
         """
 
-        user = self.db.query(orm.User).filter(orm.User.id == access_token.user_id).first()
+        user = self.db.query(orm.User).filter_by(id=access_token.user_id).first()
         if user is None:
             raise ValueError("No user for access token: %s" % access_token.user_id)
+        client = self.db.query(orm.OAuthClient).filter_by(identifier=access_token.client_id).first()
         orm_access_token = orm.OAuthAccessToken(
-            client_id=access_token.client_id,
+            client=client,
             grant_type=access_token.grant_type,
             expires_at=access_token.expires_at,
             refresh_token=access_token.refresh_token,
@@ -101,10 +102,12 @@ class AuthCodeStore(HubDBMixin, oauth2.store.AuthCodeStore):
                  given code.
 
         """
-        orm_code = self.db\
+        orm_code = (
-            .query(orm.OAuthCode)\
+            self.db
-            .filter(orm.OAuthCode.code == code)\
+            .query(orm.OAuthCode)
+            .filter_by(code=code)
             .first()
+        )
         if orm_code is None:
             raise AuthCodeNotFound()
         else:
@@ -118,7 +121,6 @@ class AuthCodeStore(HubDBMixin, oauth2.store.AuthCodeStore):
                 data={'session_id': orm_code.session_id},
             )
 
-
     def save_code(self, authorization_code):
         """
         Stores the data belonging to an authorization code token.
@@ -126,11 +128,29 @@ class AuthCodeStore(HubDBMixin, oauth2.store.AuthCodeStore):
         :param authorization_code: An instance of
                                    :class:`oauth2.datatype.AuthorizationCode`.
         """
+        orm_client = (
+            self.db
+            .query(orm.OAuthClient)
+            .filter_by(identifier=authorization_code.client_id)
+            .first()
+        )
+        if orm_client is None:
+            raise ValueError("No such client: %s" % authorization_code.client_id)
+
+        orm_user = (
+            self.db
+            .query(orm.User)
+            .filter_by(id=authorization_code.user_id)
+            .first()
+        )
+        if orm_user is None:
+            raise ValueError("No such user: %s" % authorization_code.user_id)
+
         orm_code = orm.OAuthCode(
-            client_id=authorization_code.client_id,
+            client=orm_client,
             code=authorization_code.code,
             expires_at=authorization_code.expires_at,
-            user_id=authorization_code.user_id,
+            user=orm_user,
             redirect_uri=authorization_code.redirect_uri,
             session_id=authorization_code.data.get('session_id', ''),
         )
@@ -146,7 +166,7 @@ class AuthCodeStore(HubDBMixin, oauth2.store.AuthCodeStore):
 
         :param code: The authorization code.
         """
-        orm_code = self.db.query(orm.OAuthCode).filter(orm.OAuthCode.code == code).first()
+        orm_code = self.db.query(orm.OAuthCode).filter_by(code=code).first()
         if orm_code is not None:
             self.db.delete(orm_code)
             self.db.commit()
@@ -185,10 +205,12 @@ class ClientStore(HubDBMixin, oauth2.store.ClientStore):
         :raises: :class:`oauth2.error.ClientNotFoundError` if no data could be retrieved for
                  given client_id.
         """
-        orm_client = self.db\
+        orm_client = (
-            .query(orm.OAuthClient)\
+            self.db
-            .filter(orm.OAuthClient.identifier == client_id)\
+            .query(orm.OAuthClient)
+            .filter_by(identifier=client_id)
             .first()
+        )
         if orm_client is None:
             raise ClientNotFoundError()
         return Client(identifier=client_id,
@@ -202,10 +224,12 @@ class ClientStore(HubDBMixin, oauth2.store.ClientStore):
         hash its client_secret before putting it in the database.
         """
         # clear existing clients with same ID
-        for client in self.db\
+        for orm_client in (
+            self.db
             .query(orm.OAuthClient)\
-                .filter(orm.OAuthClient.identifier == client_id):
+            .filter_by(identifier=client_id)
-            self.db.delete(client)
+        ):
+            self.db.delete(orm_client)
         self.db.commit()
 
         orm_client = orm.OAuthClient(

jupyterhub/orm.py

@@ -14,16 +14,19 @@ from tornado.log import app_log
 
 from sqlalchemy.types import TypeDecorator, TEXT, LargeBinary
 from sqlalchemy import (
-    inspect,
+    create_engine, event, inspect,
     Column, Integer, ForeignKey, Unicode, Boolean,
-    DateTime, Enum
+    DateTime, Enum, Table,
 )
-from sqlalchemy.ext.declarative import declarative_base, declared_attr
+from sqlalchemy.ext.declarative import declarative_base
 from sqlalchemy.interfaces import PoolListener
-from sqlalchemy.orm import backref, sessionmaker, relationship
+from sqlalchemy.orm import (
+    Session,
+    interfaces, object_session, relationship, sessionmaker,
+)
+
 from sqlalchemy.pool import StaticPool
 from sqlalchemy.sql.expression import bindparam
-from sqlalchemy import create_engine, Table
 
 from .utils import (
     random_port,
@@ -88,7 +91,7 @@ class Group(Base):
     __tablename__ = 'groups'
     id = Column(Integer, primary_key=True, autoincrement=True)
     name = Column(Unicode(255), unique=True)
-    users = relationship('User', secondary='user_group_map', back_populates='groups')
+    users = relationship('User', secondary='user_group_map', backref='groups')
 
     def __repr__(self):
         return "<%s %s (%i users)>" % (
@@ -133,9 +136,6 @@ class User(Base):
         "Spawner",
         backref="user",
         cascade="all, delete-orphan",
-        # can't use passive-deletes on this one
-        # because we rely on orm-level delete
-        # for Spawner.server
     )
     @property
     def orm_spawners(self):
@@ -149,13 +149,16 @@ class User(Base):
         "APIToken",
         backref="user",
         cascade="all, delete-orphan",
-        passive_deletes=True,
     )
     oauth_tokens = relationship(
         "OAuthAccessToken",
         backref="user",
         cascade="all, delete-orphan",
-        passive_deletes=True,
+    )
+    oauth_codes = relationship(
+        "OAuthCode",
+        backref="user",
+        cascade="all, delete-orphan",
     )
     cookie_id = Column(Unicode(255), default=new_token, nullable=False, unique=True)
     # User.state is actually Spawner state
@@ -164,8 +167,6 @@ class User(Base):
     # Authenticators can store their state here:
     # Encryption is handled elsewhere
     encrypted_auth_state = Column(LargeBinary)
-    # group mapping
-    groups = relationship('Group', secondary='user_group_map', back_populates='users')
 
     def __repr__(self):
         return "<{cls}({name} {running}/{total} running)>".format(
@@ -234,7 +235,6 @@ class Service(Base):
         "APIToken",
         backref="service",
         cascade="all, delete-orphan",
-        passive_deletes=True,
     )
 
     # service-specific interface
@@ -408,10 +408,10 @@ class APIToken(Hashed, Base):
         orm_token.token = token
         if user:
             assert user.id is not None
-            orm_token.user_id = user.id
+            orm_token.user = user
         else:
             assert service.id is not None
-            orm_token.service_id = service.id
+            orm_token.service = service
         db.add(orm_token)
         db.commit()
         return token
@@ -498,6 +498,18 @@ class OAuthClient(Base):
     secret = Column(Unicode(255))
     redirect_uri = Column(Unicode(1023))
 
+    access_tokens = relationship(
+        OAuthAccessToken,
+        backref='client',
+        cascade='all, delete-orphan',
+    )
+    codes = relationship(
+        OAuthCode,
+        backref='client',
+        cascade='all, delete-orphan',
+    )
+
+# General database utilities
 
 class DatabaseSchemaMismatch(Exception):
     """Exception raised when the database schema version does not match
@@ -512,6 +524,39 @@ class ForeignKeysListener(PoolListener):
         dbapi_con.execute('pragma foreign_keys=ON')
 
 
+def _expire_relationship(target, relationship_prop):
+    """Expire relationship backrefs
+
+    used when an object with relationships is deleted
+    """
+
+    session = object_session(target)
+    # get peer objects to be expired
+    peers = getattr(target, relationship_prop.key)
+    if peers is None:
+        # no peer to clear
+        return
+    # many-to-many and one-to-many have a list of peers
+    # many-to-one has only one
+    if relationship_prop.direction is interfaces.MANYTOONE:
+        peers = [peers]
+    for obj in peers:
+        if inspect(obj).persistent:
+            session.expire(obj, [relationship_prop.back_populates])
+
+
+@event.listens_for(Session, "persistent_to_deleted")
+def _notify_deleted_relationships(session, obj):
+    """Expire relationships when an object becomes deleted
+
+    Needed for
+    """
+    mapper = inspect(obj).mapper
+    for prop in mapper.relationships:
+        if prop.back_populates:
+            _expire_relationship(obj, prop)
+
+
 def check_db_revision(engine):
     """Check the JupyterHub database revision
 
@@ -576,7 +621,10 @@ def check_db_revision(engine):
         ))
 
 
-def new_session_factory(url="sqlite:///:memory:", reset=False, **kwargs):
+def new_session_factory(url="sqlite:///:memory:",
+                        reset=False,
+                        expire_on_commit=False,
+                        **kwargs):
     """Create a new session at url"""
     if url.startswith('sqlite'):
         kwargs.setdefault('connect_args', {'check_same_thread': False})
@@ -599,5 +647,11 @@ def new_session_factory(url="sqlite:///:memory:", reset=False, **kwargs):
     check_db_revision(engine)
     Base.metadata.create_all(engine)
 
-    session_factory = sessionmaker(bind=engine)
+    # We set expire_on_commit=False, since we don't actually need
+    # SQLAlchemy to expire objects after commiting - we don't expect
+    # concurrent runs of the hub talking to the same db. Turning
+    # this off gives us a major performance boost
+    session_factory = sessionmaker(bind=engine,
+                                   expire_on_commit=expire_on_commit,
+    )
     return session_factory

jupyterhub/tests/mocking.py

@@ -222,12 +222,21 @@ class MockHub(JupyterHub):
 
     def load_config_file(self, *args, **kwargs):
         pass
+
     def init_tornado_application(self):
         """Instantiate the tornado Application object"""
         super().init_tornado_application()
         # reconnect tornado_settings so that mocks can update the real thing
         self.tornado_settings = self.users.settings = self.tornado_application.settings
 
+    def init_services(self):
+        # explicitly expire services before reinitializing
+        # this only happens in tests because re-initialize
+        # does not occur in a real instance
+        for service in self.db.query(orm.Service):
+            self.db.expire(service)
+        return super().init_services()
+
     @gen.coroutine
     def initialize(self, argv=None):
         self.pid_file = NamedTemporaryFile(delete=False).name

jupyterhub/tests/test_api.py

@@ -280,7 +280,7 @@ def test_get_self(app):
     db.commit()
     oauth_token = orm.OAuthAccessToken(
         user=u.orm_user,
-        client_id=oauth_client.identifier,
+        client=oauth_client,
         token=token,
         grant_type=orm.GrantType.authorization_code,
     )

jupyterhub/tests/test_orm.py

@@ -289,6 +289,7 @@ def test_spawner_delete_cascade(db):
 
     # verify that server gets deleted
     assert_not_found(db, orm.Server, server_id)
+    assert user.orm_spawners == {}
 
 
 def test_user_delete_cascade(db):
@@ -305,11 +306,11 @@ def test_user_delete_cascade(db):
     spawner = orm.Spawner(user=user)
     db.commit()
     spawner.server = server = orm.Server()
-    oauth_code = orm.OAuthCode(client_id=oauth_client.identifier, user_id=user.id)
+    oauth_code = orm.OAuthCode(client=oauth_client, user=user)
     db.add(oauth_code)
     oauth_token = orm.OAuthAccessToken(
-        client_id=oauth_client.identifier,
+        client=oauth_client,
-        user_id=user.id,
+        user=user,
         grant_type=orm.GrantType.authorization_code,
     )
     db.add(oauth_token)
@@ -343,15 +344,16 @@ def test_oauth_client_delete_cascade(db):
 
     # create a bunch of objects that reference the User
     # these should all be deleted automatically when the user goes away
-    oauth_code = orm.OAuthCode(client_id=oauth_client.identifier, user_id=user.id)
+    oauth_code = orm.OAuthCode(client=oauth_client, user=user)
     db.add(oauth_code)
     oauth_token = orm.OAuthAccessToken(
-        client_id=oauth_client.identifier,
+        client=oauth_client,
-        user_id=user.id,
+        user=user,
         grant_type=orm.GrantType.authorization_code,
     )
     db.add(oauth_token)
     db.commit()
+    assert user.oauth_tokens == [oauth_token]
 
     # record all of the ids
     oauth_code_id = oauth_code.id
@@ -364,3 +366,80 @@ def test_oauth_client_delete_cascade(db):
     # verify that everything gets deleted
     assert_not_found(db, orm.OAuthCode, oauth_code_id)
     assert_not_found(db, orm.OAuthAccessToken, oauth_token_id)
+    assert user.oauth_tokens == []
+    assert user.oauth_codes == []
+
+
+def test_delete_token_cascade(db):
+    user = orm.User(name='mobs')
+    db.add(user)
+    db.commit()
+    user.new_api_token()
+    api_token = user.api_tokens[0]
+    db.delete(api_token)
+    db.commit()
+    assert user.api_tokens == []
+
+
+def test_group_delete_cascade(db):
+    user1 = orm.User(name='user1')
+    user2 = orm.User(name='user2')
+    group1 = orm.Group(name='group1')
+    group2 = orm.Group(name='group2')
+    db.add(user1)
+    db.add(user2)
+    db.add(group1)
+    db.add(group2)
+    db.commit()
+    # add user to group via user.groups works
+    user1.groups.append(group1)
+    db.commit()
+    assert user1 in group1.users
+
+    # add user to group via groups.users works
+    group1.users.append(user2)
+    db.commit()
+    assert user1 in group1.users
+    assert user2 in group1.users
+    assert group1 in user1.groups
+    assert group1 in user2.groups
+
+    # fill out the connections (no new concept)
+    group2.users.append(user1)
+    group2.users.append(user2)
+    db.commit()
+    assert user1 in group1.users
+    assert user2 in group1.users
+    assert user1 in group2.users
+    assert user2 in group2.users
+    assert group1 in user1.groups
+    assert group1 in user2.groups
+    assert group2 in user1.groups
+    assert group2 in user2.groups
+
+    # now start deleting
+    # 1. remove group via user.groups
+    user1.groups.remove(group2)
+    db.commit()
+    assert user1 not in group2.users
+    assert group2 not in user1.groups
+
+    # 2. remove user via group.users
+    group1.users.remove(user2)
+    db.commit()
+    assert user2 not in group1.users
+    assert group1 not in user2.groups
+
+    # 3. delete group object
+    db.delete(group2)
+    db.commit()
+    assert group2 not in user1.groups
+    assert group2 not in user2.groups
+
+    # 4. delete user object
+    db.delete(user1)
+    db.commit()
+    assert user1 not in group1.users
+
+
+

jupyterhub/tests/test_spawner.py

@@ -370,14 +370,10 @@ def test_spawner_delete_server(app):
     assert spawner.server is not None
     assert spawner.orm_spawner.server is not None
 
-    # trigger delete via db
+    # setting server = None triggers delete
-    db.delete(spawner.orm_spawner.server)
-    db.commit()
-    assert spawner.orm_spawner.server is None
-
-    # setting server = None also triggers delete
     spawner.server = None
     db.commit()
+    assert spawner.orm_spawner.server is None
     # verify that the server was actually deleted from the db
     assert db.query(orm.Server).filter(orm.Server.id == server_id).first() is None
     # verify that both ORM and top-level references are None