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Remove obsolete upgrade scripts and clean-database.sql. Related to

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DS-2167
This commit is contained in:
Tim Donohue
2014-10-31 17:04:03 +00:00
parent 8f2fe3abf0
commit a5d077b708
3 changed files with 0 additions and 436 deletions
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97
dspace-api/src/main/java/org/dspace/administer/Upgrade101To11.java
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@@ -1,97 +0,0 @@
/**
* The contents of this file are subject to the license and copyright
* detailed in the LICENSE and NOTICE files at the root of the source
* tree and available online at
*
* http://www.dspace.org/license/
*/
package org.dspace.administer;
import org.dspace.content.DCDate;
import org.dspace.core.Context;
import org.dspace.storage.rdbms.DatabaseManager;
import org.dspace.storage.rdbms.TableRow;
import org.dspace.storage.rdbms.TableRowIterator;
/**
* A command-line tool for performing necessary tweaks in the database for the
* new last_modified column in the item table.
*
* @author Robert Tansley
* @version $Revision$
*/
public class Upgrade101To11
{
/**
* For invoking via the command line
*
* @param argv
* command-line arguments
*/
public static void main(String[] argv)
{
Context context = null;
try
{
context = new Context();
// Deal with withdrawn items first.
// last_modified takes the value of the deletion date
TableRowIterator tri = DatabaseManager.queryTable(context, "item",
"SELECT * FROM item WHERE withdrawal_date IS NOT NULL");
while (tri.hasNext())
{
TableRow row = tri.next();
DCDate d = new DCDate(row.getStringColumn("withdrawal_date"));
row.setColumn("last_modified", d.toDate());
DatabaseManager.update(context, row);
}
tri.close();
// Next, update those items with a date.available
tri = DatabaseManager.query(context,
"SELECT item.item_id, dcvalue.text_value FROM item, dctyperegistry, "+
"dcvalue WHERE item.item_id=dcvalue.item_id AND dcvalue.dc_type_id="+
"dctyperegistry.dc_type_id AND dctyperegistry.element LIKE 'date' "+
"AND dctyperegistry.qualifier LIKE 'available'");
while (tri.hasNext())
{
TableRow resultRow = tri.next();
DCDate d = new DCDate(resultRow.getStringColumn("text_value"));
// Can't update the row, have to do a separate query
TableRow itemRow = DatabaseManager.find(context, "item",
resultRow.getIntColumn("item_id"));
itemRow.setColumn("last_modified", d.toDate());
DatabaseManager.update(context, itemRow);
}
tri.close();
// Finally, for all items that have no date.available or withdrawal
// date, set the update time to now!
DatabaseManager.updateQuery(context,
"UPDATE item SET last_modified=now() WHERE last_modified IS NULL");
context.complete();
System.out.println("Last modified dates set");
System.exit(0);
}
catch (Exception e)
{
System.err.println("Exception occurred:" + e);
e.printStackTrace();
if (context != null)
{
context.abort();
}
System.exit(1);
}
}
}

198
dspace-api/src/main/java/org/dspace/administer/Upgrade11To12.java
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@@ -1,198 +0,0 @@
/**
* The contents of this file are subject to the license and copyright
* detailed in the LICENSE and NOTICE files at the root of the source
* tree and available online at
*
* http://www.dspace.org/license/
*/
package org.dspace.administer;
import org.dspace.content.Bitstream;
import org.dspace.content.BitstreamFormat;
import org.dspace.content.Bundle;
import org.dspace.content.Collection;
import org.dspace.content.Item;
import org.dspace.content.ItemIterator;
import org.dspace.core.Context;
/**
* Command-line tool for making changes to DSpace database when updating from
* version 1.1/1.1.1 to 1.2.
* <P>
* The changes are:
* <ul>
* <li>Setting owning collection field for items
* <li>Reorganising content bitstreams into one bundle named ORIGINAL, license
* bitstreams into a bundle named LICENSE
* <li>Setting the sequence_id numbers in the bitstream table. This happens as
* item.update() is called on every item.
* <li>If a (newly-reorganised) 'ORIGINAL' bundle contains a text/html
* bitstream, that bitstream is set to the primary bitstream for HTML support.
* </ul>
*/
public class Upgrade11To12
{
public static void main(String[] argv) throws Exception
{
Context c = new Context();
// ve are superuser!
c.setIgnoreAuthorization(true);
ItemIterator ii = null;
// first set owning Collections
Collection[] collections = Collection.findAll(c);
System.out.println("Setting item owningCollection fields in database");
for (int q = 0; q < collections.length; q++)
{
ii = collections[q].getItems();
while (ii.hasNext())
{
Item myItem = ii.next();
// set it if it's not already set
if (myItem.getOwningCollection() == null)
{
myItem.setOwningCollection(collections[q]);
myItem.update();
System.out.println("Set owner of item " + myItem.getID()
+ " to collection " + collections[q].getID());
}
}
}
// commit pending transactions before continuing
c.commit();
// now combine some bundles
ii = Item.findAll(c);
while (ii.hasNext())
{
boolean skipItem = false;
Item myItem = ii.next();
int licenseBundleIndex = -1; // array index of license bundle (we'll
// skip this one often)
int primaryBundleIndex = -1; // array index of our primary bundle
// (all bitstreams assemble here)
System.out.println("Processing item #: " + myItem.getID());
Bundle[] myBundles = myItem.getBundles();
// look for bundles with multiple bitstreams
// (if any found, we'll skip this item)
for (int i = 0; i < myBundles.length; i++)
{
// skip if bundle is already named
if (myBundles[i].getName() != null)
{
System.out
.println("Skipping this item - named bundles already found");
skipItem = true;
break;
}
Bitstream[] bitstreams = myBundles[i].getBitstreams();
// skip this item if we already have bundles combined in this
// item
if (bitstreams.length > 1)
{
System.out
.println("Skipping this item - compound bundles already found");
skipItem = true;
break;
}
// is this the license? check the format
BitstreamFormat bf = bitstreams[0].getFormat();
if ("License".equals(bf.getShortDescription()))
{
System.out.println("Found license!");
if (licenseBundleIndex == -1)
{
licenseBundleIndex = i;
System.out.println("License bundle set to: " + i);
}
else
{
System.out
.println("ERROR - multiple license bundles in item - skipping");
skipItem = true;
break;
}
}
else
{
// not a license, if primary isn't set yet, set it
if (primaryBundleIndex == -1)
{
primaryBundleIndex = i;
System.out.println("Primary bundle set to: " + i);
}
}
}
if (!skipItem)
{
// name the primary and license bundles
if (primaryBundleIndex != -1)
{
myBundles[primaryBundleIndex].setName("ORIGINAL");
myBundles[primaryBundleIndex].update();
}
if (licenseBundleIndex != -1)
{
myBundles[licenseBundleIndex].setName("LICENSE");
myBundles[licenseBundleIndex].update();
}
for (int i = 0; i < myBundles.length; i++)
{
Bitstream[] bitstreams = myBundles[i].getBitstreams();
// now we can safely assume no bundles with multiple
// bitstreams
if (bitstreams.length > 0 && (i != primaryBundleIndex) && (i != licenseBundleIndex))
{
// only option left is a bitstream to be combined
// with primary bundle
// and remove now-redundant bundle
myBundles[primaryBundleIndex]
.addBitstream(bitstreams[0]); // add to
// primary
myItem.removeBundle(myBundles[i]); // remove this
// bundle
System.out.println("Bitstream from bundle " + i
+ " moved to primary bundle");
// flag if HTML bitstream
if (bitstreams[0].getFormat().getMIMEType().equals(
"text/html"))
{
System.out
.println("Set primary bitstream to HTML file in item #"
+ myItem.getID()
+ " for HTML support.");
}
}
}
}
}
c.complete();
}
}

141
dspace/etc/clean-database.sql
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@@ -1,141 +0,0 @@
--
-- clean-database.sql
--
-- Version: $Revision$
--
-- Date: $Date$
--
-- Copyright (c) 2002-2009, The DSpace Foundation. All rights reserved.
--
-- Redistribution and use in source and binary forms, with or without
-- modification, are permitted provided that the following conditions are
-- met:
--
-- - Redistributions of source code must retain the above copyright
-- notice, this list of conditions and the following disclaimer.
--
-- - Redistributions in binary form must reproduce the above copyright
-- notice, this list of conditions and the following disclaimer in the
-- documentation and/or other materials provided with the distribution.
--
-- - Neither the name of the DSpace Foundation nor the names of its
-- contributors may be used to endorse or promote products derived from
-- this software without specific prior written permission.
--
-- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
-- ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
-- LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
-- A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
-- HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
-- INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
-- BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
-- OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
-- ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
-- TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
-- USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
-- DAMAGE.
--
-- DSpace database cleaner
--
-- This SQL "cleans" a database used by a DSpace installation. It removes
-- all tables etc. so the database is completely empty and ready for a
-- fresh installation. Of course, this means all data is lost.
--
-- This should be kept in sync if database_schema.sql is updated.
-- Drop the views
DROP VIEW Community2Item;
DROP VIEW DCValue;
-- Then the tables
-- WARNING: The ordering below MATTERS as many tables have interdependencies
DROP TABLE collection_item_count;
DROP TABLE community_item_count;
DROP TABLE checksum_history;
DROP TABLE most_recent_checksum;
DROP TABLE checksum_results;
DROP TABLE Communities2Item;
DROP TABLE EPersonGroup2WorkspaceItem;
DROP TABLE Subscription;
DROP TABLE RegistrationData;
DROP TABLE TasklistItem;
DROP TABLE WorkflowItem;
DROP TABLE WorkspaceItem;
DROP TABLE Handle;
DROP TABLE Doi;
DROP TABLE EPersonGroup2EPerson;
DROP TABLE ResourcePolicy;
DROP TABLE Collection2Item;
DROP TABLE Community2Collection;
DROP TABLE Community2Community;
DROP TABLE MetadataValue;
DROP TABLE MetadataFieldRegistry;
DROP TABLE MetadataSchemaRegistry;
DROP TABLE Bundle2Bitstream;
DROP TABLE Item2Bundle;
DROP TABLE harvested_collection;
DROP TABLE harvested_item;
DROP TABLE Group2GroupCache;
DROP TABLE Group2Group;
DROP TABLE FileExtension;
DROP TABLE webapp;
DROP TABLE requestitem;
-- Drop main object tables near end as many other tables have dependencies on them
DROP TABLE versionitem;
DROP TABLE versionhistory;
DROP TABLE Community;
DROP TABLE Collection;
DROP TABLE Item;
DROP TABLE Bundle;
DROP TABLE Bitstream;
-- BitstreamFormatRegistry is referenced by bitstreams
DROP TABLE BitstreamFormatRegistry;
-- People and Groups are referenced by Items, Collections, Communities
DROP TABLE EPersonGroup;
DROP TABLE EPerson;
-- Now drop the sequences for ID (primary key) creation
DROP SEQUENCE bitstreamformatregistry_seq;
DROP SEQUENCE fileextension_seq;
DROP SEQUENCE bitstream_seq;
DROP SEQUENCE checksum_history_seq;
DROP SEQUENCE eperson_seq;
DROP SEQUENCE epersongroup_seq;
DROP SEQUENCE item_seq;
DROP SEQUENCE bundle_seq;
DROP SEQUENCE item2bundle_seq;
DROP SEQUENCE bundle2bitstream_seq;
DROP SEQUENCE dcvalue_seq;
DROP SEQUENCE community_seq;
DROP SEQUENCE community2community_seq;
DROP SEQUENCE collection_seq;
DROP SEQUENCE community2collection_seq;
DROP SEQUENCE collection2item_seq;
DROP SEQUENCE resourcepolicy_seq;
DROP SEQUENCE epersongroup2eperson_seq;
DROP SEQUENCE handle_seq;
DROP SEQUENCE doi_seq;
DROP SEQUENCE workspaceitem_seq;
DROP SEQUENCE workflowitem_seq;
DROP SEQUENCE tasklistitem_seq;
DROP SEQUENCE registrationdata_seq;
DROP SEQUENCE subscription_seq;
DROP SEQUENCE communities2item_seq;
DROP SEQUENCE epersongroup2workspaceitem_seq;
DROP SEQUENCE metadataschemaregistry_seq;
DROP SEQUENCE metadatafieldregistry_seq;
DROP SEQUENCE metadatavalue_seq;
DROP SEQUENCE group2group_seq;
DROP SEQUENCE group2groupcache_seq;
DROP SEQUENCE harvested_collection_seq;
DROP SEQUENCE harvested_item_seq;
DROP SEQUENCE versionhistory_seq;
DROP SEQUENCE versionitem_seq;
DROP SEQUENCE webapp_seq;
DROP SEQUENCE requestitem_seq;
-- Drop the getnextid() function
DROP FUNCTION getnextid;