hazza/docker-stacks
1
0
Fork 0
mirror of https://github.com/jupyter/docker-stacks.git synced 2025-10-16 22:42:57 +00:00
Code Issues Packages Projects Releases Wiki Activity

Remove micromamba after use

Browse Source
This commit is contained in:
Ben Mares
2022-02-02 21:27:51 +01:00
parent a36293a101
commit a392d30cb0
1 changed files with 37 additions and 35 deletions
Download Patch File Download Diff File Expand all files Collapse all files

72
base-notebook/Dockerfile
View File

@@ -69,60 +69,62 @@ RUN sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/' /etc/skel/.bashr
# Add call to conda init script see https://stackoverflow.com/a/58081608/4413446
echo 'eval "$(command conda shell.bash hook 2> /dev/null)"' >> /etc/skel/.bashrc
# Create NB_USER with name jovyan user with UID=1000 and in the 'users' group
# and make sure these dirs are writable by the `users` group.
# Setup work directory for backward-compatibility
RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \
sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \
useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && \
mkdir -p "${CONDA_DIR}" && \
chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && \
chmod g+w /etc/passwd && \
mkdir "/home/${NB_USER}/work" && \
fix-permissions "${HOME}"
USER ${NB_UID}
ARG PYTHON_VERSION=3.9
# Download and install Micromamba, and initialize Conda prefix.
# <https://github.com/mamba-org/mamba#micromamba>
# Similar projects using Micromamba:
# - Micromamba-Docker: <https://github.com/mamba-org/micromamba-docker>
# - repo2docker: <https://github.com/jupyterhub/repo2docker>
# hadolint ignore=DL3003
# Similar projects using Micromamba:
# - Micromamba-Docker: <https://github.com/mamba-org/micromamba-docker>
# - repo2docker: <https://github.com/jupyterhub/repo2docker>
# Configure the environment
# Install Python, Mamba, Jupyter Notebook, Lab, and Hub
# Generate a notebook server config
# Cleanup temporary files and remove Micromamba
# Correct permissions
# Do all this in a single RUN command to avoid duplicating all of the
# files across image layers when the permissions change
WORKDIR /tmp
RUN set -x && \
cd /usr/local && \
arch=$(uname -m) && \
if [ "${arch}" == "x86_64" ]; then \
# Should be simpler, see <https://github.com/mamba-org/mamba/issues/1437>
arch="64"; \
fi && \
wget --debug -qO- "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" | tar -xvj bin/micromamba && \
micromamba create --prefix="${CONDA_DIR}"
# Create NB_USER with name jovyan user with UID=1000 and in the 'users' group
# and make sure these dirs are writable by the `users` group.
RUN echo "auth requisite pam_deny.so" >> /etc/pam.d/su && \
sed -i.bak -e 's/^%admin/#%admin/' /etc/sudoers && \
sed -i.bak -e 's/^%sudo/#%sudo/' /etc/sudoers && \
useradd -l -m -s /bin/bash -N -u "${NB_UID}" "${NB_USER}" && \
chown "${NB_USER}:${NB_GID}" "${CONDA_DIR}" && \
chmod g+w /etc/passwd && \
fix-permissions "${HOME}" && \
fix-permissions "${CONDA_DIR}"
USER ${NB_UID}
ARG PYTHON_VERSION=3.9
# Setup work directory for backward-compatibility
RUN mkdir "/home/${NB_USER}/work" && \
fix-permissions "/home/${NB_USER}"
# Configure the environment
# Install Python, Mamba, Jupyter Notebook, Lab, and Hub
# Generate a notebook server config
# Cleanup temporary files
# Correct permissions
# Do all this in a single RUN command to avoid duplicating all of the
# files across image layers when the permissions change
RUN set -x && \
wget -qO- "https://micromamba.snakepit.net/api/micromamba/linux-${arch}/latest" \
| tar -xvj bin/micromamba && \
# bin/micromamba create --prefix="${CONDA_DIR}" && \
PYTHON_SPECIFIER="python=${PYTHON_VERSION}" && \
if [[ "${PYTHON_VERSION}" == "default" ]]; then PYTHON_SPECIFIER="python"; fi && \
# TODO: use `micromamba config` or report issue.
echo "show_channel_urls: true" >> "${CONDA_DIR}/.condarc" && \
echo "channels:" >> "${CONDA_DIR}/.condarc" && \
echo " - conda-forge" >> "${CONDA_DIR}/.condarc" && \
micromamba install --prefix="${CONDA_DIR}" --quiet --yes \
bin/micromamba install \
--root-prefix="${CONDA_DIR}" \
--prefix="${CONDA_DIR}" \
--quiet --yes \
"${PYTHON_SPECIFIER}" \
'mamba' \
'notebook' \
'jupyterhub' \
'jupyterlab' && \
# There should be just a single binary inside bin/
rm bin/micromamba && \
rmdir bin && \
# Conda configuration see https://conda.io/projects/conda/en/latest/configuration.html
conda config --system --set auto_update_conda false && \
# Pin major.minor version of python