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Author SHA1 Message Date
romainx
0f2a7473c4 Regular update 2020-11-05 20:55:18 +01:00
Romain
95ccda3619 Merge pull request #1182 from romainx/feat_1083 
nbconvert + inkscape test improvements
 2020-10-30 20:16:02 +01:00
romainx
0cc1f8ddc4 nbconvert + inkscape test improvements 2020-10-25 17:44:37 +01:00
GitHub Actions
32768af316 [ci skip] Automated publish for 5ee27aa513 2020-10-24 20:17:46 +00:00
Romain
5ee27aa513 Merge pull request #1178 from das-g/copy-with-chown-in-recipes-dockerfiles 
recipes: use COPY with --chown for jovyan's files
 2020-10-24 22:17:03 +02:00
GitHub Actions
d676cdf9b4 [ci skip] Automated publish for 45bfe5a474 2020-10-21 07:11:03 +00:00
Romain
45bfe5a474 Merge pull request #1181 from romainx/update_2020-11-20 
Update docker stacks 2020-11-20
 2020-10-21 09:10:28 +02:00
romainx
f055648e44 Rollback changes made on editors 2020-10-21 08:23:49 +02:00
romainx
4271b09b33 rollback pyarrow update 2020-10-20 12:10:36 +02:00
romainx
32090f6011 Update docker stack 2020-11-20 
The following changes have been made.

- `base-notebook`
  - `Changed`: Bump Ubuntu
  - `Changed`: Bump conda
  - `Fixed`: Add missing `apt-get clean`
- `minimal-notebook`
  - `Removed`: `jed` editor see #1174 (partial)
  - `Deprecated`: `emacs` editor (in the documentation and in the image) see #1174 (partial)
- `scipy-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `dask`
  - `Changed`: Bump `protobuf`
- `r-notebook`
  - `Changed`: Bump `r-base`
  - `Changed`: Bump `r-rmarkdown`
  - `Removed`: The description of `tidyverse` packages because it's not the place to do that and it will always be obsolete.
- `datascience-notebook`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Removed`: `plyr` package because it's retired fixes #1103
  - `Removed`: `r-reshape2` package because it's retired fixes #1103
  - `Changed`: Bump `r-rmarkdown`
  - `Changed`: Bump Julia
- `tensorflow-notebook`
  - `Changed`: Bump `tensorflow`
- `pyspark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `pyarrow`
- `all-spark-notebook`
  - `Fixed`: Add missing `apt-get clean`
  - `Changed`: Bump `r-base` to `4.0.x` see #1102 (partial)
  - `Changed`: Bump `r-sparklyr`
 2020-10-20 11:36:34 +02:00
GitHub Actions
1e2831c75a [ci skip] Automated publish for feacdbfc2e 2020-10-12 12:11:48 +00:00
Romain
feacdbfc2e Merge pull request #1176 from mathbunnyru/asalikhov/pre_commit 
Run pre-commit hooks server side
 2020-10-12 14:11:04 +02:00
Raphael Das Gupta
d6da5aef56 recipes: use COPY with --chown for jovyan's files 
By default, Dockerfile's COPY creates files and directories with UID and
GID 0. (See https://docs.docker.com/engine/reference/builder/#copy)
When we put them in jovyan's $HOME or want jovyan to manipulate these
files, they should be owned by jovyan instead.

Specifically
https://jupyter-docker-stacks.readthedocs.io/en/latest/using/recipes.html#add-a-python-3-x-environment
failed with a "permission denied" error when the code for using an
environment.yml file was uncommented. I assume some of the other recipes
might have failed like that, too, but I didn't test them.
 2020-10-09 19:18:11 +02:00
Ayaz Salikhov
668cc9311a Fix 2020-10-06 11:35:03 +03:00
Ayaz Salikhov
025413bb2d Run pre-commit hooks server side 2020-10-05 23:39:40 +03:00
GitHub Actions
c47a268cea [ci skip] Automated publish for 4a112c0f11 2020-10-05 04:37:17 +00:00
Romain
4a112c0f11 Merge pull request #1172 from romainx/nano-tiny 
nano -> nano-tiny
 2020-10-05 06:36:26 +02:00
Romain
36d857bb01 Merge pull request #1173 from mathbunnyru/asalikhov/fix_bashate 
Fix bashate style issues
 2020-09-30 21:14:09 +02:00
Ayaz Salikhov
5b678ca407 Fix bashate style issues 2020-09-30 16:46:33 +03:00
romainx
8201c14ef4 nano -> nano-tiny 2020-09-30 06:45:26 +02:00
Romain
150731d32f Merge pull request #1118 from mathbunnyru/asalikhov/py_codestyle 
Fix python codestyle
 2020-09-28 19:35:41 +02:00
Ayaz Salikhov
2418c50b61 Fix 2020-09-28 06:43:58 +03:00
Ayaz Salikhov
234dd4295a Add autopep8 2020-09-28 06:41:58 +03:00
Ayaz Salikhov
cab70d11c5 Fix 2020-09-28 06:39:42 +03:00
Ayaz Salikhov
e3085ca89e Merge branch 'master' into asalikhov/py_codestyle 2020-09-28 06:37:23 +03:00
Romain
74b0a01aeb Merge pull request #1170 from romainx/test_imp 
Matplotlib test refactoring (Follow-on PR #1169)
 2020-09-26 21:34:44 +02:00
romainx
e1b97737f8 Matplotlib test factorization (Follow-on PR #1169) 2020-09-26 11:29:43 +02:00
Romain
332db3db9e Merge pull request #1166 from jan-janssen/master 
Activate conda base environment by default
 2020-09-26 06:46:13 +02:00
Romain
9c97376140 Merge pull request #1159 from romainx/stack_update 
Stack update
 2020-09-26 05:46:22 +02:00
Romain
dc62000e45 Merge pull request #1169 from mpmdean/cm-super-scipy-notebook 
Add `cm-super` package install to `scipy-notebook` required for `matplotlib` latex labels.
 2020-09-25 18:47:37 +02:00
Mark Dean
f527551a44 add cm-super 2020-09-25 11:16:19 -04:00
Jan Janssen
9553e22546 Update Dockerfile 2020-09-25 11:35:06 +02:00
Jan Janssen
0d5de3de64 Update Dockerfile 2020-09-25 11:34:18 +02:00
Jan Janssen
d5ade51615 Update Dockerfile 2020-09-20 13:06:33 +02:00
Jan Janssen
76fd840df4 Update Dockerfile 2020-09-20 13:04:32 +02:00
Jan Janssen
aaa10c4e88 Update Dockerfile 2020-09-20 13:02:53 +02:00
Jan Janssen
0fdbb3bef9 Update Dockerfile 2020-09-20 12:57:17 +02:00
Jan Janssen
07dcef2109 Write __conda_setup to ~/.profile 
Some conda packages rely in the `conda activate` to set the corresponding environment variables, therefore just including the `bin` directory in the `PATH` is not sufficient.
 2020-09-20 12:41:17 +02:00
Romain
612aa5710b Merge pull request #1165 from dmpe/patch-2 
Update Dockerfile fix spelling
 2020-09-19 19:47:49 +02:00
John
83ec89d4bc Update Dockerfile 2020-09-19 18:59:31 +02:00
romainx
325dd5b3e2 Fix build (hope) 
- miniconda versions and arguments
- remove useless hd5 install (dependency of h5py)
- pin the version of pyarrow
 2020-09-19 17:27:47 +02:00
romainx
5f4c9a148d rollback r-base to 3.6.3 2020-09-19 08:28:34 +02:00
romainx
78c70dce88 Stack update (partial) 
Following images updated

- `base-notebook`
- `scipy-notebook`
- `tensorflow-notebook`
- `tensorflow`
- `datascience-notebook`
- `r-notebook`
 2020-09-19 07:17:45 +02:00
GitHub Actions
e16db0575b [ci skip] Automated publish for 4b26cce185 2020-09-18 19:01:26 +00:00
Peter Parente
4b26cce185 Merge pull request #1158 from romainx/spark_3_0_1 
Spark 3.0.1 -> fixes #1156
 2020-09-18 15:00:44 -04:00
romainx
67e4600b09 Merge branch 'spark_3_0_1' of https://github.com/romainx/docker-stacks into spark_3_0_1 2020-09-17 04:51:44 +02:00
romainx
8cd98a1bff Fixes #1161 
Added a note in the documentation to indicate that the build will only work with Spark current versions.
 2020-09-17 04:50:11 +02:00
romainx
a4c467e472 Fixes #1160 
Added a note in the documentation to indicate that the build will only work with Spark current versions.
 2020-09-17 04:48:02 +02:00
romainx
39dc7752e8 Fixed test test_cli_args 
Changed `""` into `''` to pass an empty token. Seems to be linked to this warning:
```
/opt/conda/lib/python3.8/site-packages/traitlets/traitlets.py:2195: FutureWarning: Supporting extra quotes around Unicode is deprecated in traitlets 5.0. Use '' instead of "''" – or use CUnicode.
```

Added debug information (ouput of the command line).
 2020-09-10 20:00:24 +02:00
romainx
384acda330 Spark 3.0.1 -> fixes #1156 2020-09-10 15:25:00 +02:00