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fd7a494cc59f1ca16d39375634b7f77c3beebe3c
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69 Commits

Author SHA1 Message Date
John Ramey
fd7a494cc5 Added the R tidyverse to datascience-notebook 2017-02-19 17:31:24 -06:00
Peter Parente
012b408e73 Upgrade to r-base 3.3.2 
Remove pinning for plotting fix and upgrade other R packages
 2017-01-02 23:11:30 -05:00
Peter Parente
19fe00c08c debian, miniconda, notebook version, option updates 
* Upgrade to latest debian base image
* Upgrade to Notebook 4.3
* Upgrade to Miniconda 4.2.12
* Remove USE_HTTPS env var in favor of command line options for key and cert
* Add GEN_CERT env var for generating a self-signed certificate
* Remove PASSWORD env var in favor of the new Notebook 4.3 default token auth
  or the more secure a hashed password command line option
 2016-12-31 23:27:54 -05:00
Alan Du
4c3db22140 Precompile Julia packages 2016-11-17 17:26:01 +00:00
Alan Du
77669a9352 Fix Julia DL_LOAD_PATH 2016-11-17 17:26:01 +00:00
Alan Du
8974dbbe08 Upgrade Julia to v0.5 
This is pretty hacky -- we're using a Ubuntu 14.04 PPA to install
something on Debian Jessie -- but everything seems to work.
 2016-11-17 17:26:01 +00:00
Matt McCormick
3f86381329 Add badges with image size and layers 
This uses the MicroBadger badge service. It allows prospective image users to
quickly get an idea of the size of an image from glancing at the README.
 2016-11-13 23:31:58 -05:00
Peter Parente
d762cb9790 Update to IRKernel 0.7 
Version 0.6 does not work after all containers rebuild
 2016-10-11 21:30:02 -05:00
Peter Parente
3e0eb813cb Fix #269, NB_UID regression 
Workaround docker / aufs permission problems
 2016-10-11 21:29:15 -05:00
Adam Chainz
c28742a097 Convert readthedocs links for their .org -> .io migration for hosted projects 
As per [their blog post of the 27th April](https://blog.readthedocs.com/securing-subdomains/) ‘Securing subdomains’:

> Starting today, Read the Docs will start hosting projects from subdomains on the domain readthedocs.io, instead of on readthedocs.org. This change addresses some security concerns around site cookies while hosting user generated data on the same domain as our dashboard.

Test Plan: Manually visited all the links I’ve modified.
 2016-10-09 22:20:48 +01:00
Peter Parente
0d47f10af2 Workaround for R plotting regression 
Pin r-base to 3.3.1-1 (3.3.1-3 breaks it)
 2016-09-09 23:40:23 -04:00
Peter Parente
30d37c0186 Remove busted jhub internal link 2016-08-09 16:35:04 -04:00
Peter Parente
ed068a7d62 Rebase and update all READMEs 2016-08-09 16:32:10 -04:00
david cochran
37b50dc325 fix broken hyperlinks in READMEs 2016-08-08 21:59:31 -07:00
Peter Parente
47703bba50 [skip ci] Fix a doc copy-pasta mess 
(c) Copyright IBM Corp. 2016
 2016-07-25 12:57:06 -04:00
Peter Parente
3f3fa27d3e Document how to set a hashed password 
Already supported via the command line.
Update all the READMEs.

(c) Copyright IBM Corp. 2016
 2016-07-17 22:30:24 -04:00
Michael Poplavski
d7cdfd8691 Update R version to 3.3* in r-notebook and datascience-notebook 2016-07-14 10:36:10 -05:00
Peter Parente
dd0b2ed864 Merge pull request #227 from minrk/only-mv-julia 
Only move julia kernelspec
 2016-06-28 12:01:01 -04:00
Min RK
d000a6b286 Only move julia kernelspec 
rather than all kernelspecs that might be in the user kernelspec dir
 2016-06-28 16:37:34 +02:00
Sebastian Reuße
fdb247ec0c Make use of available environment variables 
base-notebook defines environment variables for the Conda install path and the
notebook user. However, in some instances, these locations were still hardcoded.
Let’s use the variables instead.
 2016-06-28 11:31:24 +02:00
Peter Parente
e384a4512b Add pip2, pip3 symlinks for images with python2 
Fixes #123

(c) Copyright IBM Corp. 2016
 2016-05-29 23:09:48 -04:00
Carol Willing
c9c15d2cad Update link in README 2016-05-11 21:59:08 -07:00
Peter Parente
0e9023199b [no ci] Document notebook.pem format 
Fixes #198

(c) Copyright IBM Corp. 2016
 2016-05-06 07:56:46 -04:00
Peter Parente
39104f2432 Upgrade to notebook 4.2, ipywidgets 5.0 2016-04-26 08:55:18 -04:00
Werner Beroux
30325e9c54 Update README.md 
Fixes inconcistent PEM path (described as being `/home/jovyan/.local/share/jupyter/notebook.pem` and not `/home/jovyan/.ipython/profile_default/security/notebook.pem`).

Merges with README of https://github.com/jupyter/docker-stacks/tree/master/minimal-notebook
 2016-04-22 14:59:37 +02:00
Justin Tyberg
cf78782f87 Add single-user scripts to minimal-notebook stack to make notebook 
stacks easily usable with JupyterHub.

* pip install jupyterhub to gain access to the jupyterhub-singleuser
  startup script, which starts a single-user instance of the Notebook
  server
* Add shell script to wrap jupyterhub-singleuser script; use as
  alternate Docker command

fixes #181

(c) Copyright IBM Corp. 2016
 2016-04-12 15:37:03 -04:00
Jean-Christophe Fillion-Robin
334cf7ae0d README: Change NB_USER to NB_UID 
Update text to be consistent with list of documented options.
 2016-04-11 15:01:54 -04:00
jakirkham
9f4ed032ba Merge pull request #166 from mkolovic/add-hdf5-julia 
Add hdf5 julia support to datascience stack
 2016-03-21 19:54:57 -04:00
Kyle Kelley
258e25c03c Merge pull request #162 from minrk/singleuser 
build JupyterHub singleuser images for each notebook stack
 2016-03-21 12:45:59 -05:00
Mladen Kolovic
5c2618f27a Add HDF5 support for Julia 
* create `.juliarc.jl` start up script to point Julia to conda libraries, specifically the hdf5 libraries installed through the h5py package in the scipy stack
* add the HDF5 Julia package

Update README.md to document HDF5 addition

Add -F option to force config load

Add the -F flag to julia expression execution to load .juliarc.jl before execution.
 2016-03-21 13:30:16 -04:00
Min RK
7f2be9cdbd Notes about JupyterHub singleuser images in READMEs 2016-03-21 14:40:42 +01:00
Peter Parente
6069c4e295 [ci skip] Add badges to stack READMEs 
(c) Copyright IBM Corp. 2016
 2016-03-18 08:03:39 -04:00
Peter Parente
63d4015537 Rebase datascience-notebook on scipy-notebook 
Fixes #139

(c) Copyright IBM Corp. 2016
 2016-03-13 23:16:01 -04:00
John Kirkham
af11fbc3c4 docker: Add and install from the r channel with conda. 2016-03-08 16:59:45 -05:00
John Kirkham
630ceec257 Dockerfile: Clean apt-get lists. 2016-03-07 21:38:40 -05:00
John Kirkham
4d27738276 Have docker ignore READMEs. 2016-03-07 20:35:45 -05:00
John Kirkham
a5cc245a7a docker: Make conda installs quieter. 2016-03-06 21:13:57 -05:00
John Kirkham
5548f94b8d datascience-notebook/Dockerfile: Clean out conda. 2016-03-04 18:29:32 -05:00
John Kirkham
61dc40b2c6 datascience-notebook/Dockerfile: Tell conda yes. 2016-03-04 17:33:07 -05:00
Peter Parente
e66ffa3141 Add libav-tools for matplotlib animation 
(c) Copyright IBM Corp. 2016
 2016-02-26 08:43:01 -05:00
Fernando Perez
3eefa923fe Update conda to py35/current, tini to 0.9.0 and add jed/emacs editors. 2016-02-12 21:22:42 -08:00
Fernando Perez
b8b0460d7a Update package versions for both py2/py3and add h5py to base list. 2016-02-12 20:08:55 -08:00
Peter Parente
90a3d2ef7d Note bump to notebook 4.1.x 
(c) Copyright IBM Corp. 2016
 2016-01-17 11:27:34 -05:00
Peter Parente
9aae44ef66 Use updated LICENSE.md file 
Also fix copyright headers on various files
 2016-01-17 11:27:10 -05:00
Peter Parente
2988869079 Merge pull request #92 from parente/jovyan-by-default 
Make jovyan the default user for the docker cmd
 2016-01-04 20:53:47 -05:00
Peter Parente
b7aeac87f4 Install libxrender1 to appease matplotlib 
Bite the bullet and preinstall it so that plotting libs that default
to using desktop rendering just work (matplotlib, ggplot, ...)
out of the box without having to get configuration right beforehand
(e.g., %matplotlib inline ahead of matplotlib import)

Only adds ~100k to the image size

(c) Copyright IBM Corp. 2015
 2016-01-02 12:45:30 -05:00
Peter Parente
6d5cd67528 Make jovyan the default user for the docker cmd 
* Switch to jovyan at the end of every Dockerfile
* Document --user root requirement for NB_UID and GRANT_SUDO flags

(c) Copyright IBM Corp. 2015
 2015-12-27 21:05:48 -05:00
Peter Parente
d8c83ec385 Bump r-irkernel to 0.5 to fix zmq issue 
Requires r-rmarkdown=0.8, r-devtools=1.9, r-tidyr=0.3 in r-notebook

(c) Copyright IBM Corp. 2015
 2015-12-17 17:00:50 -05:00
Peter Parente
0a29b08d7c Add rpy2 
Requires bump of devtools, tidyr, and rmarkdown too

(c) Copyright IBM Corp. 2015
 2015-12-05 21:26:47 -05:00
Peter Parente
8b0d810878 Fix datascience-notebook build after pandas bump 
patsy, numba, bokeh all need upgrade to satisfy conda constraints

(c) Copyright IBM Corp. 2015
 2015-12-04 22:36:51 -05:00