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* Try to fix mamba under aarch64 QEMU by setting ENV G_SLICE=always-malloc * Set G_SLICE inside if statement * Write "extract_threads: 1" to /opt/.condarc Co-authored-by: Ayaz Salikhov <mathbunnyru@gmail.com>
70 lines
1.8 KiB
Docker
70 lines
1.8 KiB
Docker
# Copyright (c) Jupyter Development Team.
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# Distributed under the terms of the Modified BSD License.
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ARG OWNER=jupyter
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ARG BASE_CONTAINER=$OWNER/minimal-notebook
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FROM $BASE_CONTAINER
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LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
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# Fix: https://github.com/hadolint/hadolint/wiki/DL4006
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# Fix: https://github.com/koalaman/shellcheck/wiki/SC3014
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SHELL ["/bin/bash", "-o", "pipefail", "-c"]
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USER root
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# R pre-requisites
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RUN apt-get update --yes && \
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apt-get install --yes --no-install-recommends \
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fonts-dejavu \
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unixodbc \
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unixodbc-dev \
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r-cran-rodbc \
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gfortran \
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gcc && \
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apt-get clean && rm -rf /var/lib/apt/lists/*
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USER ${NB_UID}
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# R packages including IRKernel which gets installed globally.
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# r-e1071: dependency of the caret R package
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RUN arch=$(uname -m) && \
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if [ "${arch}" == "aarch64" ]; then \
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# Prevent libmamba from sporadically hanging on arm64 under QEMU
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# <https://github.com/mamba-org/mamba/issues/1611>
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export G_SLICE=always-malloc; \
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fi && \
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mamba install --quiet --yes \
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'r-base' \
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'r-caret' \
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'r-crayon' \
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'r-devtools' \
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'r-e1071' \
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'r-forecast' \
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'r-hexbin' \
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'r-htmltools' \
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'r-htmlwidgets' \
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'r-irkernel' \
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'r-nycflights13' \
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'r-randomforest' \
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'r-rcurl' \
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'r-rmarkdown' \
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'r-rodbc' \
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'r-rsqlite' \
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'r-shiny' \
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'r-tidyverse' \
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'unixodbc' && \
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mamba clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# `r-tidymodels` is not easy to install under arm
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RUN set -x && \
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arch=$(uname -m) && \
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if [ "${arch}" == "x86_64" ]; then \
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mamba install --quiet --yes \
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'r-tidymodels' && \
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mamba clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"; \
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fi;
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