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Currently, the sections in index.rst are using ** for bold, rather than true section headers. This prevents them from being linkable. Since we'd like to link to the 'contributing' section from CONTRIBUTING.md, we change this by moving everything to section headers. We also move to the toctree directive, since it keeps the bullets aligned properly (they were hanging if we used simple * markers) This also replaces CONTRIBUTING.md content with a link to the docs.